Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06540

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c06530 and PGA1_c06540 are separated by 50 nucleotidesPGA1_c06540 and PGA1_c06550 are separated by 22 nucleotides PGA1_c06530: PGA1_c06530 - dihydroneopterin aldolase-like protein, at 671,099 to 672,019 _c06530 PGA1_c06540: PGA1_c06540 - dihydropteroate synthase FolP, at 672,070 to 673,011 _c06540 PGA1_c06550: PGA1_c06550 - phosphoglucosamine mutase GlmM, at 673,034 to 674,380 _c06550 Position (kb) 672 673 674Strain fitness (log2 ratio) -1 0 1at 671.986 kb on - strandat 672.002 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
671,986 - -1.3
672,002 + -0.2

Or see this region's nucleotide sequence