Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05090 and PGA1_c05100 are separated by 27 nucleotides PGA1_c05100 and PGA1_c05110 are separated by 161 nucleotides PGA1_c05110 and PGA1_c05120 overlap by 10 nucleotides PGA1_c05120 and PGA1_c05130 overlap by 1 nucleotides
PGA1_c05090: PGA1_c05090 - putative glycosyl transferase, at 501,768 to 502,712
_c05090
PGA1_c05100: PGA1_c05100 - transcriptional regulator, GntR type, at 502,740 to 503,402
_c05100
PGA1_c05110: PGA1_c05110 - dihydrodipicolinate synthase domain-containing protein, at 503,564 to 504,523
_c05110
PGA1_c05120: PGA1_c05120 - 4-hydroxyproline epimerase, at 504,514 to 505,458
_c05120
PGA1_c05130: PGA1_c05130 - aldehyde dehydrogenase, at 505,458 to 506,888
_c05130
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 502.643 kb on + strand at 502.651 kb on - strand at 502.651 kb on - strand at 502.660 kb on + strand at 502.660 kb on + strand at 502.697 kb on + strand at 502.722 kb on - strand at 502.745 kb on - strand at 502.751 kb on + strand at 502.751 kb on - strand at 502.759 kb on - strand at 502.759 kb on - strand at 502.783 kb on + strand at 502.808 kb on - strand, within PGA1_c05100 at 502.810 kb on + strand, within PGA1_c05100 at 502.825 kb on - strand, within PGA1_c05100 at 502.864 kb on + strand, within PGA1_c05100 at 502.872 kb on - strand, within PGA1_c05100 at 502.872 kb on - strand, within PGA1_c05100 at 502.890 kb on - strand, within PGA1_c05100 at 502.958 kb on + strand, within PGA1_c05100 at 503.016 kb on + strand, within PGA1_c05100 at 503.017 kb on - strand, within PGA1_c05100 at 503.019 kb on - strand, within PGA1_c05100 at 503.019 kb on - strand, within PGA1_c05100 at 503.053 kb on - strand, within PGA1_c05100 at 503.067 kb on + strand, within PGA1_c05100 at 503.096 kb on - strand, within PGA1_c05100 at 503.118 kb on + strand, within PGA1_c05100 at 503.118 kb on + strand, within PGA1_c05100 at 503.118 kb on + strand, within PGA1_c05100 at 503.177 kb on + strand, within PGA1_c05100 at 503.185 kb on + strand, within PGA1_c05100 at 503.193 kb on + strand, within PGA1_c05100 at 503.200 kb on + strand, within PGA1_c05100 at 503.321 kb on + strand, within PGA1_c05100 at 503.337 kb on - strand at 503.371 kb on + strand at 503.420 kb on - strand at 503.420 kb on - strand at 503.422 kb on + strand at 503.441 kb on - strand at 503.441 kb on - strand at 503.510 kb on + strand at 503.518 kb on - strand at 503.544 kb on + strand at 503.555 kb on + strand at 503.571 kb on + strand at 503.607 kb on - strand at 503.619 kb on - strand at 503.624 kb on - strand at 503.690 kb on - strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.700 kb on - strand, within PGA1_c05110 at 503.700 kb on - strand, within PGA1_c05110 at 503.700 kb on - strand, within PGA1_c05110 at 503.816 kb on - strand, within PGA1_c05110 at 503.816 kb on - strand, within PGA1_c05110 at 503.816 kb on - strand, within PGA1_c05110 at 503.843 kb on + strand, within PGA1_c05110 at 503.862 kb on + strand, within PGA1_c05110 at 503.862 kb on + strand, within PGA1_c05110 at 503.870 kb on - strand, within PGA1_c05110 at 503.870 kb on - strand, within PGA1_c05110 at 503.870 kb on - strand, within PGA1_c05110 at 503.870 kb on - strand, within PGA1_c05110 at 503.943 kb on - strand, within PGA1_c05110 at 503.974 kb on - strand, within PGA1_c05110 at 504.022 kb on + strand, within PGA1_c05110 at 504.048 kb on + strand, within PGA1_c05110 at 504.048 kb on + strand, within PGA1_c05110 at 504.048 kb on + strand, within PGA1_c05110 at 504.056 kb on + strand, within PGA1_c05110 at 504.056 kb on - strand, within PGA1_c05110 at 504.056 kb on - strand, within PGA1_c05110 at 504.056 kb on - strand, within PGA1_c05110 at 504.077 kb on - strand, within PGA1_c05110 at 504.104 kb on + strand, within PGA1_c05110 at 504.104 kb on + strand, within PGA1_c05110 at 504.147 kb on + strand, within PGA1_c05110 at 504.157 kb on - strand, within PGA1_c05110 at 504.221 kb on + strand, within PGA1_c05110 at 504.245 kb on - strand, within PGA1_c05110 at 504.292 kb on + strand, within PGA1_c05110 at 504.292 kb on + strand, within PGA1_c05110 at 504.313 kb on + strand, within PGA1_c05110 at 504.321 kb on + strand, within PGA1_c05110 at 504.321 kb on + strand, within PGA1_c05110 at 504.329 kb on - strand, within PGA1_c05110 at 504.383 kb on + strand, within PGA1_c05110 at 504.471 kb on - strand at 504.474 kb on + strand at 504.474 kb on + strand at 504.482 kb on + strand at 504.490 kb on - strand at 504.490 kb on - strand at 504.554 kb on + strand at 504.562 kb on - strand at 504.644 kb on + strand, within PGA1_c05120 at 504.652 kb on - strand, within PGA1_c05120 at 504.652 kb on - strand, within PGA1_c05120 at 504.717 kb on - strand, within PGA1_c05120 at 504.787 kb on - strand, within PGA1_c05120 at 504.805 kb on + strand, within PGA1_c05120 at 504.813 kb on - strand, within PGA1_c05120 at 504.815 kb on + strand, within PGA1_c05120 at 504.857 kb on + strand, within PGA1_c05120 at 504.983 kb on - strand, within PGA1_c05120 at 505.004 kb on + strand, within PGA1_c05120 at 505.010 kb on - strand, within PGA1_c05120 at 505.012 kb on - strand, within PGA1_c05120 at 505.022 kb on + strand, within PGA1_c05120 at 505.029 kb on - strand, within PGA1_c05120 at 505.032 kb on + strand, within PGA1_c05120 at 505.073 kb on + strand, within PGA1_c05120 at 505.075 kb on - strand, within PGA1_c05120 at 505.078 kb on + strand, within PGA1_c05120 at 505.085 kb on - strand, within PGA1_c05120 at 505.085 kb on - strand, within PGA1_c05120 at 505.101 kb on - strand, within PGA1_c05120 at 505.118 kb on + strand, within PGA1_c05120 at 505.142 kb on + strand, within PGA1_c05120 at 505.147 kb on + strand, within PGA1_c05120 at 505.147 kb on + strand, within PGA1_c05120 at 505.147 kb on + strand, within PGA1_c05120 at 505.147 kb on + strand, within PGA1_c05120 at 505.150 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.198 kb on + strand, within PGA1_c05120 at 505.198 kb on + strand, within PGA1_c05120 at 505.206 kb on - strand, within PGA1_c05120 at 505.206 kb on - strand, within PGA1_c05120 at 505.206 kb on - strand, within PGA1_c05120 at 505.206 kb on - strand, within PGA1_c05120 at 505.206 kb on - strand, within PGA1_c05120 at 505.286 kb on + strand, within PGA1_c05120 at 505.286 kb on + strand, within PGA1_c05120 at 505.286 kb on + strand, within PGA1_c05120 at 505.313 kb on + strand, within PGA1_c05120 at 505.331 kb on + strand, within PGA1_c05120 at 505.420 kb on - strand at 505.442 kb on + strand at 505.447 kb on + strand at 505.450 kb on - strand at 505.497 kb on - strand at 505.497 kb on - strand at 505.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 502,643 + -0.0 502,651 - +0.4 502,651 - -1.3 502,660 + +0.2 502,660 + +0.4 502,697 + -0.8 502,722 - -1.1 502,745 - +1.2 502,751 + +1.0 502,751 - -0.6 502,759 - -0.7 502,759 - +0.2 502,783 + -2.4 502,808 - PGA1_c05100 0.10 +1.4 502,810 + PGA1_c05100 0.11 +1.1 502,825 - PGA1_c05100 0.13 -0.1 502,864 + PGA1_c05100 0.19 -2.1 502,872 - PGA1_c05100 0.20 -0.2 502,872 - PGA1_c05100 0.20 +0.2 502,890 - PGA1_c05100 0.23 -1.6 502,958 + PGA1_c05100 0.33 -0.4 503,016 + PGA1_c05100 0.42 -1.1 503,017 - PGA1_c05100 0.42 -1.0 503,019 - PGA1_c05100 0.42 -0.0 503,019 - PGA1_c05100 0.42 +0.4 503,053 - PGA1_c05100 0.47 -1.3 503,067 + PGA1_c05100 0.49 -0.5 503,096 - PGA1_c05100 0.54 +1.1 503,118 + PGA1_c05100 0.57 -2.1 503,118 + PGA1_c05100 0.57 -0.5 503,118 + PGA1_c05100 0.57 -1.0 503,177 + PGA1_c05100 0.66 +0.7 503,185 + PGA1_c05100 0.67 -0.3 503,193 + PGA1_c05100 0.68 -0.4 503,200 + PGA1_c05100 0.69 -0.1 503,321 + PGA1_c05100 0.88 -0.7 503,337 - +3.3 503,371 + +0.4 503,420 - +0.6 503,420 - -0.1 503,422 + -0.3 503,441 - -0.2 503,441 - -1.8 503,510 + +0.7 503,518 - +1.1 503,544 + -0.7 503,555 + +0.4 503,571 + -0.0 503,607 - -0.7 503,619 - -1.5 503,624 - +0.5 503,690 - PGA1_c05110 0.13 -1.0 503,692 + PGA1_c05110 0.13 +2.3 503,692 + PGA1_c05110 0.13 -0.6 503,692 + PGA1_c05110 0.13 +0.4 503,692 + PGA1_c05110 0.13 -1.3 503,700 - PGA1_c05110 0.14 -0.3 503,700 - PGA1_c05110 0.14 +0.8 503,700 - PGA1_c05110 0.14 -0.3 503,816 - PGA1_c05110 0.26 +0.2 503,816 - PGA1_c05110 0.26 -0.8 503,816 - PGA1_c05110 0.26 -1.1 503,843 + PGA1_c05110 0.29 -1.0 503,862 + PGA1_c05110 0.31 -0.5 503,862 + PGA1_c05110 0.31 -0.7 503,870 - PGA1_c05110 0.32 +0.6 503,870 - PGA1_c05110 0.32 -2.1 503,870 - PGA1_c05110 0.32 -2.5 503,870 - PGA1_c05110 0.32 -0.3 503,943 - PGA1_c05110 0.39 +1.6 503,974 - PGA1_c05110 0.43 -2.0 504,022 + PGA1_c05110 0.48 -0.3 504,048 + PGA1_c05110 0.50 +0.2 504,048 + PGA1_c05110 0.50 -2.9 504,048 + PGA1_c05110 0.50 -0.7 504,056 + PGA1_c05110 0.51 +1.3 504,056 - PGA1_c05110 0.51 -0.5 504,056 - PGA1_c05110 0.51 -0.0 504,056 - PGA1_c05110 0.51 -0.1 504,077 - PGA1_c05110 0.53 -0.0 504,104 + PGA1_c05110 0.56 +1.1 504,104 + PGA1_c05110 0.56 -2.8 504,147 + PGA1_c05110 0.61 -0.1 504,157 - PGA1_c05110 0.62 +2.3 504,221 + PGA1_c05110 0.68 -1.7 504,245 - PGA1_c05110 0.71 -0.3 504,292 + PGA1_c05110 0.76 -0.4 504,292 + PGA1_c05110 0.76 +1.9 504,313 + PGA1_c05110 0.78 -0.0 504,321 + PGA1_c05110 0.79 -1.6 504,321 + PGA1_c05110 0.79 -0.3 504,329 - PGA1_c05110 0.80 -0.6 504,383 + PGA1_c05110 0.85 -2.5 504,471 - -1.8 504,474 + -0.5 504,474 + -0.5 504,482 + +0.6 504,490 - -1.8 504,490 - +1.5 504,554 + +0.0 504,562 - -0.7 504,644 + PGA1_c05120 0.14 +0.2 504,652 - PGA1_c05120 0.15 -1.4 504,652 - PGA1_c05120 0.15 +0.4 504,717 - PGA1_c05120 0.21 -1.1 504,787 - PGA1_c05120 0.29 +0.6 504,805 + PGA1_c05120 0.31 +0.1 504,813 - PGA1_c05120 0.32 -0.1 504,815 + PGA1_c05120 0.32 -0.4 504,857 + PGA1_c05120 0.36 +1.5 504,983 - PGA1_c05120 0.50 -0.0 505,004 + PGA1_c05120 0.52 +0.6 505,010 - PGA1_c05120 0.52 -0.0 505,012 - PGA1_c05120 0.53 +1.4 505,022 + PGA1_c05120 0.54 -0.5 505,029 - PGA1_c05120 0.54 +0.2 505,032 + PGA1_c05120 0.55 -0.2 505,073 + PGA1_c05120 0.59 -0.7 505,075 - PGA1_c05120 0.59 +0.5 505,078 + PGA1_c05120 0.60 +0.4 505,085 - PGA1_c05120 0.60 -0.7 505,085 - PGA1_c05120 0.60 -0.0 505,101 - PGA1_c05120 0.62 +0.7 505,118 + PGA1_c05120 0.64 +0.7 505,142 + PGA1_c05120 0.66 +0.5 505,147 + PGA1_c05120 0.67 +0.9 505,147 + PGA1_c05120 0.67 +0.2 505,147 + PGA1_c05120 0.67 -0.2 505,147 + PGA1_c05120 0.67 -0.1 505,150 - PGA1_c05120 0.67 -0.8 505,155 - PGA1_c05120 0.68 +0.3 505,155 - PGA1_c05120 0.68 -0.3 505,155 - PGA1_c05120 0.68 +1.6 505,155 - PGA1_c05120 0.68 +0.4 505,155 - PGA1_c05120 0.68 +1.1 505,155 - PGA1_c05120 0.68 -0.0 505,155 - PGA1_c05120 0.68 -0.6 505,198 + PGA1_c05120 0.72 -0.0 505,198 + PGA1_c05120 0.72 -3.2 505,206 - PGA1_c05120 0.73 +0.1 505,206 - PGA1_c05120 0.73 +0.3 505,206 - PGA1_c05120 0.73 +0.4 505,206 - PGA1_c05120 0.73 +0.3 505,206 - PGA1_c05120 0.73 +0.9 505,286 + PGA1_c05120 0.82 +0.4 505,286 + PGA1_c05120 0.82 -0.5 505,286 + PGA1_c05120 0.82 +1.0 505,313 + PGA1_c05120 0.85 +0.5 505,331 + PGA1_c05120 0.86 +0.8 505,420 - +1.7 505,442 + -1.3 505,447 + -2.1 505,450 - -0.7 505,497 - +0.7 505,497 - +0.6 505,498 - +1.0
Or see this region's nucleotide sequence