Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04150

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04140 and PGA1_c04150 overlap by 20 nucleotidesPGA1_c04150 and PGA1_c04160 are separated by 63 nucleotides PGA1_c04140: PGA1_c04140 - putative acyl-CoA dehydrogenase, at 401,615 to 402,760 _c04140 PGA1_c04150: PGA1_c04150 - thioesterase domain-containing protein, at 402,741 to 403,205 _c04150 PGA1_c04160: PGA1_c04160 - putative crotonobetaine/carnitine-CoA ligase, at 403,269 to 404,774 _c04160 Position (kb) 402 403 404Strain fitness (log2 ratio) -2 -1 0 1at 401.816 kb on + strand, within PGA1_c04140at 401.816 kb on + strand, within PGA1_c04140at 401.824 kb on - strand, within PGA1_c04140at 401.843 kb on + strand, within PGA1_c04140at 401.843 kb on + strand, within PGA1_c04140at 401.843 kb on + strand, within PGA1_c04140at 401.843 kb on + strand, within PGA1_c04140at 401.843 kb on + strand, within PGA1_c04140at 401.851 kb on - strand, within PGA1_c04140at 401.851 kb on - strand, within PGA1_c04140at 401.851 kb on - strand, within PGA1_c04140at 401.858 kb on + strand, within PGA1_c04140at 401.885 kb on + strand, within PGA1_c04140at 401.898 kb on + strand, within PGA1_c04140at 402.025 kb on + strand, within PGA1_c04140at 402.035 kb on - strand, within PGA1_c04140at 402.165 kb on + strand, within PGA1_c04140at 402.205 kb on - strand, within PGA1_c04140at 402.248 kb on - strand, within PGA1_c04140at 402.372 kb on - strand, within PGA1_c04140at 402.374 kb on - strand, within PGA1_c04140at 402.403 kb on + strand, within PGA1_c04140at 402.497 kb on - strand, within PGA1_c04140at 402.497 kb on - strand, within PGA1_c04140at 402.499 kb on + strand, within PGA1_c04140at 402.499 kb on + strand, within PGA1_c04140at 402.512 kb on - strand, within PGA1_c04140at 402.514 kb on + strand, within PGA1_c04140at 402.514 kb on + strand, within PGA1_c04140at 402.725 kb on + strandat 402.746 kb on - strandat 402.753 kb on - strandat 402.754 kb on + strandat 402.801 kb on - strand, within PGA1_c04150at 402.846 kb on - strand, within PGA1_c04150at 402.846 kb on - strand, within PGA1_c04150at 402.886 kb on - strand, within PGA1_c04150at 402.886 kb on - strand, within PGA1_c04150at 402.933 kb on + strand, within PGA1_c04150at 403.057 kb on - strand, within PGA1_c04150at 403.082 kb on - strand, within PGA1_c04150at 403.087 kb on - strand, within PGA1_c04150at 403.124 kb on - strand, within PGA1_c04150at 403.139 kb on + strand, within PGA1_c04150at 403.209 kb on - strandat 403.209 kb on - strandat 403.251 kb on + strandat 403.251 kb on + strandat 403.262 kb on - strandat 403.266 kb on + strandat 403.267 kb on - strandat 403.321 kb on - strandat 403.347 kb on - strandat 403.355 kb on + strandat 403.406 kb on - strandat 403.406 kb on - strandat 403.417 kb on - strandat 403.426 kb on + strand, within PGA1_c04160at 403.478 kb on + strand, within PGA1_c04160at 403.494 kb on - strand, within PGA1_c04160at 403.568 kb on + strand, within PGA1_c04160at 403.576 kb on - strand, within PGA1_c04160at 403.576 kb on - strand, within PGA1_c04160at 403.576 kb on - strand, within PGA1_c04160at 403.583 kb on + strand, within PGA1_c04160at 403.588 kb on - strand, within PGA1_c04160at 403.733 kb on + strand, within PGA1_c04160at 403.733 kb on + strand, within PGA1_c04160at 403.736 kb on - strand, within PGA1_c04160at 403.736 kb on - strand, within PGA1_c04160at 403.741 kb on - strand, within PGA1_c04160at 403.773 kb on + strand, within PGA1_c04160at 403.821 kb on - strand, within PGA1_c04160at 403.842 kb on + strand, within PGA1_c04160at 403.847 kb on + strand, within PGA1_c04160at 403.847 kb on + strand, within PGA1_c04160at 403.855 kb on - strand, within PGA1_c04160at 403.855 kb on - strand, within PGA1_c04160at 403.855 kb on - strand, within PGA1_c04160at 403.857 kb on + strand, within PGA1_c04160at 403.865 kb on - strand, within PGA1_c04160at 403.875 kb on + strand, within PGA1_c04160at 403.883 kb on - strand, within PGA1_c04160at 403.892 kb on + strand, within PGA1_c04160at 403.926 kb on - strand, within PGA1_c04160at 403.943 kb on + strand, within PGA1_c04160at 403.943 kb on + strand, within PGA1_c04160at 403.951 kb on - strand, within PGA1_c04160at 403.976 kb on + strand, within PGA1_c04160at 403.989 kb on - strand, within PGA1_c04160at 403.991 kb on + strand, within PGA1_c04160at 404.047 kb on + strand, within PGA1_c04160at 404.054 kb on - strand, within PGA1_c04160at 404.055 kb on + strand, within PGA1_c04160at 404.087 kb on + strand, within PGA1_c04160at 404.100 kb on - strand, within PGA1_c04160at 404.129 kb on - strand, within PGA1_c04160at 404.189 kb on + strand, within PGA1_c04160at 404.194 kb on + strand, within PGA1_c04160

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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401,816 + PGA1_c04140 0.18 +0.0
401,816 + PGA1_c04140 0.18 -1.1
401,824 - PGA1_c04140 0.18 +0.8
401,843 + PGA1_c04140 0.20 -0.8
401,843 + PGA1_c04140 0.20 -1.0
401,843 + PGA1_c04140 0.20 +0.2
401,843 + PGA1_c04140 0.20 -1.4
401,843 + PGA1_c04140 0.20 -1.1
401,851 - PGA1_c04140 0.21 -0.7
401,851 - PGA1_c04140 0.21 +0.8
401,851 - PGA1_c04140 0.21 -1.4
401,858 + PGA1_c04140 0.21 -0.8
401,885 + PGA1_c04140 0.24 +0.8
401,898 + PGA1_c04140 0.25 -0.3
402,025 + PGA1_c04140 0.36 -0.8
402,035 - PGA1_c04140 0.37 -0.3
402,165 + PGA1_c04140 0.48 -1.6
402,205 - PGA1_c04140 0.51 -0.5
402,248 - PGA1_c04140 0.55 -0.2
402,372 - PGA1_c04140 0.66 -0.6
402,374 - PGA1_c04140 0.66 +1.3
402,403 + PGA1_c04140 0.69 +0.2
402,497 - PGA1_c04140 0.77 +0.4
402,497 - PGA1_c04140 0.77 +0.8
402,499 + PGA1_c04140 0.77 -0.6
402,499 + PGA1_c04140 0.77 +0.1
402,512 - PGA1_c04140 0.78 +0.3
402,514 + PGA1_c04140 0.78 -0.8
402,514 + PGA1_c04140 0.78 -1.5
402,725 + +1.0
402,746 - -0.1
402,753 - +0.1
402,754 + -0.1
402,801 - PGA1_c04150 0.13 +0.9
402,846 - PGA1_c04150 0.23 +0.3
402,846 - PGA1_c04150 0.23 -0.4
402,886 - PGA1_c04150 0.31 -1.1
402,886 - PGA1_c04150 0.31 +0.5
402,933 + PGA1_c04150 0.41 -1.8
403,057 - PGA1_c04150 0.68 -0.7
403,082 - PGA1_c04150 0.73 +1.1
403,087 - PGA1_c04150 0.74 +0.1
403,124 - PGA1_c04150 0.82 -0.5
403,139 + PGA1_c04150 0.86 +0.1
403,209 - -0.1
403,209 - -0.5
403,251 + -0.8
403,251 + +0.0
403,262 - -2.6
403,266 + -2.2
403,267 - +0.1
403,321 - -0.2
403,347 - +0.8
403,355 + -0.5
403,406 - -0.4
403,406 - -0.7
403,417 - +0.5
403,426 + PGA1_c04160 0.10 +0.8
403,478 + PGA1_c04160 0.14 +0.2
403,494 - PGA1_c04160 0.15 -0.4
403,568 + PGA1_c04160 0.20 +0.8
403,576 - PGA1_c04160 0.20 -0.4
403,576 - PGA1_c04160 0.20 -1.0
403,576 - PGA1_c04160 0.20 -1.6
403,583 + PGA1_c04160 0.21 -1.4
403,588 - PGA1_c04160 0.21 -0.3
403,733 + PGA1_c04160 0.31 -0.7
403,733 + PGA1_c04160 0.31 -0.2
403,736 - PGA1_c04160 0.31 -0.2
403,736 - PGA1_c04160 0.31 -2.0
403,741 - PGA1_c04160 0.31 +0.3
403,773 + PGA1_c04160 0.33 +0.0
403,821 - PGA1_c04160 0.37 +0.3
403,842 + PGA1_c04160 0.38 +0.0
403,847 + PGA1_c04160 0.38 -1.5
403,847 + PGA1_c04160 0.38 -0.2
403,855 - PGA1_c04160 0.39 +0.8
403,855 - PGA1_c04160 0.39 -0.1
403,855 - PGA1_c04160 0.39 -1.2
403,857 + PGA1_c04160 0.39 +0.6
403,865 - PGA1_c04160 0.40 -1.4
403,875 + PGA1_c04160 0.40 +1.3
403,883 - PGA1_c04160 0.41 -0.0
403,892 + PGA1_c04160 0.41 -0.4
403,926 - PGA1_c04160 0.44 -1.2
403,943 + PGA1_c04160 0.45 -0.2
403,943 + PGA1_c04160 0.45 +0.3
403,951 - PGA1_c04160 0.45 +0.8
403,976 + PGA1_c04160 0.47 +0.1
403,989 - PGA1_c04160 0.48 -0.3
403,991 + PGA1_c04160 0.48 -1.4
404,047 + PGA1_c04160 0.52 +0.2
404,054 - PGA1_c04160 0.52 +0.2
404,055 + PGA1_c04160 0.52 +0.5
404,087 + PGA1_c04160 0.54 -0.5
404,100 - PGA1_c04160 0.55 -1.4
404,129 - PGA1_c04160 0.57 -0.5
404,189 + PGA1_c04160 0.61 +1.3
404,194 + PGA1_c04160 0.61 +1.7

Or see this region's nucleotide sequence