Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3619 and HP15_3620 are separated by 259 nucleotides HP15_3620 and HP15_3621 overlap by 20 nucleotides HP15_3621 and HP15_3622 are separated by 77 nucleotides HP15_3622 and HP15_3623 overlap by 14 nucleotides HP15_3623 and HP15_3624 are separated by 68 nucleotides
HP15_3619: HP15_3619 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 3,815,372 to 3,816,958
_3619
HP15_3620: HP15_3620 - conserved hypothetical protein, at 3,817,218 to 3,817,973
_3620
HP15_3621: HP15_3621 - antioxidant, AhpC/Tsa family protein, at 3,817,954 to 3,818,430
_3621
HP15_3622: HP15_3622 - peroxiredoxin, at 3,818,508 to 3,819,071
_3622
HP15_3623: HP15_3623 - hypothetical protein, at 3,819,058 to 3,819,165
_3623
HP15_3624: HP15_3624 - transporter, BCCT family protein, at 3,819,234 to 3,820,451
_3624
Position (kb)
3817
3818
3819 Strain fitness (log2 ratio)
-2
-1
0
1 at 3816.964 kb on + strand at 3817.161 kb on + strand at 3817.229 kb on - strand at 3817.327 kb on + strand, within HP15_3620 at 3817.439 kb on - strand, within HP15_3620 at 3817.456 kb on - strand, within HP15_3620 at 3817.482 kb on - strand, within HP15_3620 at 3817.526 kb on - strand, within HP15_3620 at 3817.666 kb on - strand, within HP15_3620 at 3817.666 kb on - strand, within HP15_3620 at 3817.686 kb on - strand, within HP15_3620 at 3817.691 kb on - strand, within HP15_3620 at 3817.699 kb on + strand, within HP15_3620 at 3817.709 kb on + strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.717 kb on - strand, within HP15_3620 at 3817.743 kb on - strand, within HP15_3620 at 3817.746 kb on - strand, within HP15_3620 at 3817.944 kb on + strand at 3817.952 kb on - strand at 3817.969 kb on + strand at 3817.970 kb on + strand at 3818.062 kb on + strand, within HP15_3621 at 3818.097 kb on + strand, within HP15_3621 at 3818.097 kb on - strand, within HP15_3621 at 3818.328 kb on + strand, within HP15_3621 at 3818.328 kb on + strand, within HP15_3621 at 3818.375 kb on - strand, within HP15_3621 at 3818.506 kb on + strand at 3818.506 kb on + strand at 3818.506 kb on + strand at 3818.514 kb on - strand at 3818.533 kb on - strand at 3818.678 kb on + strand, within HP15_3622 at 3818.678 kb on + strand, within HP15_3622 at 3818.678 kb on + strand, within HP15_3622 at 3818.686 kb on - strand, within HP15_3622 at 3818.723 kb on + strand, within HP15_3622 at 3818.724 kb on + strand, within HP15_3622 at 3818.980 kb on + strand, within HP15_3622 at 3818.995 kb on + strand, within HP15_3622 at 3819.003 kb on - strand, within HP15_3622 at 3819.101 kb on + strand, within HP15_3623 at 3819.231 kb on + strand at 3819.239 kb on - strand at 3819.239 kb on - strand at 3819.239 kb on - strand at 3819.339 kb on + strand at 3819.360 kb on - strand, within HP15_3624 at 3819.416 kb on - strand, within HP15_3624
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 3,816,964 + -0.6 3,817,161 + -0.8 3,817,229 - +0.6 3,817,327 + HP15_3620 0.14 -1.1 3,817,439 - HP15_3620 0.29 +0.2 3,817,456 - HP15_3620 0.31 -0.0 3,817,482 - HP15_3620 0.35 -0.7 3,817,526 - HP15_3620 0.41 +0.5 3,817,666 - HP15_3620 0.59 -0.1 3,817,666 - HP15_3620 0.59 -0.4 3,817,686 - HP15_3620 0.62 +0.0 3,817,691 - HP15_3620 0.63 -1.6 3,817,699 + HP15_3620 0.64 -0.4 3,817,709 + HP15_3620 0.65 +0.7 3,817,717 - HP15_3620 0.66 +0.3 3,817,717 - HP15_3620 0.66 +1.0 3,817,717 - HP15_3620 0.66 +0.2 3,817,743 - HP15_3620 0.69 -0.1 3,817,746 - HP15_3620 0.70 -0.5 3,817,944 + +0.0 3,817,952 - -0.5 3,817,969 + -0.1 3,817,970 + +0.1 3,818,062 + HP15_3621 0.23 +1.2 3,818,097 + HP15_3621 0.30 +1.1 3,818,097 - HP15_3621 0.30 +0.8 3,818,328 + HP15_3621 0.78 +1.5 3,818,328 + HP15_3621 0.78 -0.7 3,818,375 - HP15_3621 0.88 -0.5 3,818,506 + +0.4 3,818,506 + -0.8 3,818,506 + -0.5 3,818,514 - -1.8 3,818,533 - -0.8 3,818,678 + HP15_3622 0.30 -0.7 3,818,678 + HP15_3622 0.30 +0.1 3,818,678 + HP15_3622 0.30 -1.7 3,818,686 - HP15_3622 0.32 -0.3 3,818,723 + HP15_3622 0.38 -1.4 3,818,724 + HP15_3622 0.38 -0.0 3,818,980 + HP15_3622 0.84 -0.6 3,818,995 + HP15_3622 0.86 -0.0 3,819,003 - HP15_3622 0.88 -0.0 3,819,101 + HP15_3623 0.40 +0.9 3,819,231 + -0.4 3,819,239 - +0.6 3,819,239 - -0.6 3,819,239 - +0.6 3,819,339 + -1.0 3,819,360 - HP15_3624 0.10 -0.9 3,819,416 - HP15_3624 0.15 -1.5
Or see this region's nucleotide sequence