Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03660 and PGA1_c03670 are separated by 109 nucleotides PGA1_c03670 and PGA1_c03680 are separated by 383 nucleotides PGA1_c03680 and PGA1_c03690 are separated by 35 nucleotides PGA1_c03690 and PGA1_c03700 are separated by 6 nucleotides PGA1_c03700 and PGA1_c03710 overlap by 1 nucleotides
PGA1_c03660: PGA1_c03660 - Predicted permeases, at 353,551 to 354,306
_c03660
PGA1_c03670: PGA1_c03670 - hypothetical protein, at 354,416 to 354,745
_c03670
PGA1_c03680: PGA1_c03680 - (3S)-malyl-CoA thioesterase [EC:3.1.2.30] <small>(from data)</small>, at 355,129 to 355,983
_c03680
PGA1_c03690: PGA1_c03690 - putative NnrU protein, at 356,019 to 356,567
_c03690
PGA1_c03700: PGA1_c03700 - Uncharacterized conserved small protein, at 356,574 to 356,777
_c03700
PGA1_c03710: PGA1_c03710 - Acyl dehydratase, at 356,777 to 357,808
_c03710
Position (kb) 355
356 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 354.131 kb on + strand, within PGA1_c03660 at 354.168 kb on - strand, within PGA1_c03660 at 354.175 kb on + strand, within PGA1_c03660 at 354.176 kb on + strand, within PGA1_c03660 at 354.176 kb on + strand, within PGA1_c03660 at 354.184 kb on - strand, within PGA1_c03660 at 354.186 kb on + strand, within PGA1_c03660 at 354.186 kb on + strand, within PGA1_c03660 at 354.194 kb on - strand, within PGA1_c03660 at 354.194 kb on - strand, within PGA1_c03660 at 354.221 kb on + strand, within PGA1_c03660 at 354.222 kb on - strand, within PGA1_c03660 at 354.222 kb on - strand, within PGA1_c03660 at 354.229 kb on - strand, within PGA1_c03660 at 354.244 kb on + strand at 354.252 kb on - strand at 354.285 kb on + strand at 354.285 kb on + strand at 354.295 kb on + strand at 354.295 kb on + strand at 354.295 kb on + strand at 354.298 kb on - strand at 354.300 kb on + strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.308 kb on - strand at 354.308 kb on - strand at 354.318 kb on - strand at 354.355 kb on - strand at 354.379 kb on - strand at 354.385 kb on + strand at 354.392 kb on + strand at 354.393 kb on - strand at 354.393 kb on - strand at 354.422 kb on - strand at 354.428 kb on + strand at 354.436 kb on - strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.446 kb on - strand at 354.446 kb on - strand at 354.446 kb on - strand at 354.464 kb on + strand, within PGA1_c03670 at 354.469 kb on + strand, within PGA1_c03670 at 354.472 kb on - strand, within PGA1_c03670 at 354.511 kb on + strand, within PGA1_c03670 at 354.605 kb on + strand, within PGA1_c03670 at 354.605 kb on + strand, within PGA1_c03670 at 354.613 kb on - strand, within PGA1_c03670 at 354.651 kb on + strand, within PGA1_c03670 at 354.656 kb on + strand, within PGA1_c03670 at 354.661 kb on + strand, within PGA1_c03670 at 354.674 kb on - strand, within PGA1_c03670 at 354.692 kb on - strand, within PGA1_c03670 at 354.708 kb on + strand, within PGA1_c03670 at 354.708 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.716 kb on - strand at 354.718 kb on - strand at 354.718 kb on - strand at 354.718 kb on - strand at 354.718 kb on - strand at 354.755 kb on - strand at 354.755 kb on - strand at 354.756 kb on - strand at 354.777 kb on + strand at 354.784 kb on + strand at 354.786 kb on - strand at 354.786 kb on - strand at 354.799 kb on + strand at 354.802 kb on - strand at 354.807 kb on - strand at 354.807 kb on - strand at 354.807 kb on - strand at 354.812 kb on - strand at 354.815 kb on + strand at 354.857 kb on + strand at 354.860 kb on - strand at 354.865 kb on - strand at 354.865 kb on - strand at 354.915 kb on - strand at 354.940 kb on + strand at 354.948 kb on - strand at 354.957 kb on + strand at 355.135 kb on - strand at 355.159 kb on + strand at 355.276 kb on + strand, within PGA1_c03680 at 355.291 kb on - strand, within PGA1_c03680 at 355.312 kb on - strand, within PGA1_c03680 at 355.323 kb on + strand, within PGA1_c03680 at 355.357 kb on + strand, within PGA1_c03680 at 355.416 kb on + strand, within PGA1_c03680 at 355.416 kb on + strand, within PGA1_c03680 at 355.471 kb on - strand, within PGA1_c03680 at 355.488 kb on + strand, within PGA1_c03680 at 355.488 kb on + strand, within PGA1_c03680 at 355.496 kb on - strand, within PGA1_c03680 at 355.496 kb on - strand, within PGA1_c03680 at 355.517 kb on - strand, within PGA1_c03680 at 355.610 kb on + strand, within PGA1_c03680 at 355.641 kb on - strand, within PGA1_c03680 at 355.684 kb on - strand, within PGA1_c03680 at 355.693 kb on + strand, within PGA1_c03680 at 355.694 kb on - strand, within PGA1_c03680 at 355.705 kb on + strand, within PGA1_c03680 at 355.712 kb on + strand, within PGA1_c03680 at 355.721 kb on - strand, within PGA1_c03680 at 355.721 kb on - strand, within PGA1_c03680 at 355.748 kb on - strand, within PGA1_c03680 at 355.777 kb on + strand, within PGA1_c03680 at 355.785 kb on - strand, within PGA1_c03680 at 355.870 kb on + strand, within PGA1_c03680 at 355.877 kb on - strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.881 kb on + strand, within PGA1_c03680 at 355.883 kb on + strand, within PGA1_c03680 at 355.883 kb on - strand, within PGA1_c03680 at 355.889 kb on - strand, within PGA1_c03680 at 355.889 kb on - strand, within PGA1_c03680 at 355.889 kb on - strand, within PGA1_c03680 at 355.980 kb on - strand at 355.980 kb on - strand at 356.002 kb on + strand at 356.002 kb on - strand at 356.031 kb on + strand at 356.097 kb on + strand, within PGA1_c03690 at 356.097 kb on + strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.105 kb on - strand, within PGA1_c03690 at 356.130 kb on + strand, within PGA1_c03690 at 356.159 kb on - strand, within PGA1_c03690 at 356.159 kb on - strand, within PGA1_c03690 at 356.175 kb on + strand, within PGA1_c03690 at 356.185 kb on + strand, within PGA1_c03690 at 356.186 kb on - strand, within PGA1_c03690 at 356.186 kb on - strand, within PGA1_c03690 at 356.233 kb on + strand, within PGA1_c03690 at 356.263 kb on + strand, within PGA1_c03690 at 356.263 kb on + strand, within PGA1_c03690 at 356.268 kb on + strand, within PGA1_c03690 at 356.271 kb on - strand, within PGA1_c03690 at 356.271 kb on - strand, within PGA1_c03690 at 356.271 kb on - strand, within PGA1_c03690 at 356.276 kb on - strand, within PGA1_c03690 at 356.276 kb on - strand, within PGA1_c03690 at 356.379 kb on - strand, within PGA1_c03690 at 356.389 kb on - strand, within PGA1_c03690 at 356.436 kb on - strand, within PGA1_c03690 at 356.441 kb on + strand, within PGA1_c03690 at 356.444 kb on - strand, within PGA1_c03690 at 356.449 kb on - strand, within PGA1_c03690 at 356.519 kb on + strand at 356.538 kb on - strand at 356.620 kb on + strand, within PGA1_c03700 at 356.628 kb on - strand, within PGA1_c03700 at 356.628 kb on - strand, within PGA1_c03700 at 356.642 kb on + strand, within PGA1_c03700 at 356.642 kb on + strand, within PGA1_c03700 at 356.650 kb on - strand, within PGA1_c03700 at 356.658 kb on + strand, within PGA1_c03700 at 356.736 kb on + strand, within PGA1_c03700 at 356.751 kb on + strand, within PGA1_c03700 at 356.759 kb on - strand at 356.780 kb on + strand at 356.780 kb on + strand at 356.787 kb on - strand at 356.788 kb on - strand at 356.789 kb on + strand at 356.792 kb on - strand at 356.797 kb on - strand at 356.797 kb on - strand at 356.869 kb on - strand at 356.937 kb on + strand, within PGA1_c03710 at 356.937 kb on + strand, within PGA1_c03710 at 356.945 kb on - strand, within PGA1_c03710
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 354,131 + PGA1_c03660 0.77 -0.1 354,168 - PGA1_c03660 0.82 +1.6 354,175 + PGA1_c03660 0.83 -0.8 354,176 + PGA1_c03660 0.83 -0.4 354,176 + PGA1_c03660 0.83 +0.6 354,184 - PGA1_c03660 0.84 +0.0 354,186 + PGA1_c03660 0.84 -0.4 354,186 + PGA1_c03660 0.84 -0.5 354,194 - PGA1_c03660 0.85 -1.6 354,194 - PGA1_c03660 0.85 -1.2 354,221 + PGA1_c03660 0.89 +0.6 354,222 - PGA1_c03660 0.89 +0.4 354,222 - PGA1_c03660 0.89 +2.3 354,229 - PGA1_c03660 0.90 -1.1 354,244 + +0.5 354,252 - -0.6 354,285 + +0.6 354,285 + -0.2 354,295 + +0.8 354,295 + -0.9 354,295 + +0.3 354,298 - +0.0 354,300 + -0.4 354,303 - -2.0 354,303 - -2.0 354,303 - +0.2 354,303 - +1.6 354,303 - -0.8 354,303 - +0.0 354,308 - -0.0 354,308 - +0.5 354,318 - +0.8 354,355 - -0.2 354,379 - +0.3 354,385 + +0.3 354,392 + +0.0 354,393 - -0.1 354,393 - +1.7 354,422 - +0.5 354,428 + +1.3 354,436 - +0.6 354,438 + -0.3 354,438 + +0.0 354,438 + -0.8 354,438 + -1.4 354,438 + -2.1 354,446 - -0.1 354,446 - -0.3 354,446 - +1.5 354,464 + PGA1_c03670 0.15 -1.1 354,469 + PGA1_c03670 0.16 +1.1 354,472 - PGA1_c03670 0.17 +1.8 354,511 + PGA1_c03670 0.29 +1.6 354,605 + PGA1_c03670 0.57 +1.0 354,605 + PGA1_c03670 0.57 +2.0 354,613 - PGA1_c03670 0.60 -1.0 354,651 + PGA1_c03670 0.71 +1.9 354,656 + PGA1_c03670 0.73 +1.3 354,661 + PGA1_c03670 0.74 +2.8 354,674 - PGA1_c03670 0.78 -0.2 354,692 - PGA1_c03670 0.84 +0.4 354,708 + PGA1_c03670 0.88 +0.8 354,708 + PGA1_c03670 0.88 -2.1 354,710 + PGA1_c03670 0.89 -0.4 354,710 + PGA1_c03670 0.89 +0.0 354,710 + PGA1_c03670 0.89 +1.0 354,710 + PGA1_c03670 0.89 +2.0 354,716 - -1.7 354,718 - -1.0 354,718 - +1.4 354,718 - +1.9 354,718 - +0.0 354,755 - -1.5 354,755 - +0.8 354,756 - +0.5 354,777 + -0.6 354,784 + +1.7 354,786 - +0.8 354,786 - -0.4 354,799 + +1.3 354,802 - -1.0 354,807 - +0.8 354,807 - +0.8 354,807 - +0.9 354,812 - +1.2 354,815 + -0.5 354,857 + -0.1 354,860 - -0.7 354,865 - -1.1 354,865 - -1.1 354,915 - -0.4 354,940 + +1.3 354,948 - -1.5 354,957 + +0.1 355,135 - +0.8 355,159 + +1.3 355,276 + PGA1_c03680 0.17 -0.2 355,291 - PGA1_c03680 0.19 -1.2 355,312 - PGA1_c03680 0.21 -1.2 355,323 + PGA1_c03680 0.23 +2.3 355,357 + PGA1_c03680 0.27 +0.9 355,416 + PGA1_c03680 0.34 -0.1 355,416 + PGA1_c03680 0.34 -0.1 355,471 - PGA1_c03680 0.40 +0.8 355,488 + PGA1_c03680 0.42 -1.1 355,488 + PGA1_c03680 0.42 -1.1 355,496 - PGA1_c03680 0.43 +2.1 355,496 - PGA1_c03680 0.43 -0.7 355,517 - PGA1_c03680 0.45 +2.9 355,610 + PGA1_c03680 0.56 -1.1 355,641 - PGA1_c03680 0.60 -0.3 355,684 - PGA1_c03680 0.65 +0.7 355,693 + PGA1_c03680 0.66 +0.6 355,694 - PGA1_c03680 0.66 -0.5 355,705 + PGA1_c03680 0.67 -0.7 355,712 + PGA1_c03680 0.68 -0.2 355,721 - PGA1_c03680 0.69 -1.1 355,721 - PGA1_c03680 0.69 +0.1 355,748 - PGA1_c03680 0.72 -0.7 355,777 + PGA1_c03680 0.76 +0.6 355,785 - PGA1_c03680 0.77 -1.8 355,870 + PGA1_c03680 0.87 +1.9 355,877 - PGA1_c03680 0.87 +0.6 355,881 + PGA1_c03680 0.88 +1.2 355,881 + PGA1_c03680 0.88 +0.1 355,881 + PGA1_c03680 0.88 -1.5 355,881 + PGA1_c03680 0.88 -0.2 355,881 + PGA1_c03680 0.88 -1.2 355,881 + PGA1_c03680 0.88 -0.8 355,881 + PGA1_c03680 0.88 -2.1 355,883 + PGA1_c03680 0.88 -1.0 355,883 - PGA1_c03680 0.88 +1.2 355,889 - PGA1_c03680 0.89 -0.1 355,889 - PGA1_c03680 0.89 -0.4 355,889 - PGA1_c03680 0.89 +0.6 355,980 - -0.2 355,980 - -1.2 356,002 + +1.3 356,002 - -1.1 356,031 + +0.5 356,097 + PGA1_c03690 0.14 +2.3 356,097 + PGA1_c03690 0.14 -0.7 356,105 - PGA1_c03690 0.16 -0.8 356,105 - PGA1_c03690 0.16 -0.9 356,105 - PGA1_c03690 0.16 -0.7 356,105 - PGA1_c03690 0.16 -0.4 356,130 + PGA1_c03690 0.20 -1.2 356,159 - PGA1_c03690 0.26 -1.8 356,159 - PGA1_c03690 0.26 -0.7 356,175 + PGA1_c03690 0.28 -1.2 356,185 + PGA1_c03690 0.30 -0.6 356,186 - PGA1_c03690 0.30 -0.8 356,186 - PGA1_c03690 0.30 +0.2 356,233 + PGA1_c03690 0.39 -1.8 356,263 + PGA1_c03690 0.44 +1.1 356,263 + PGA1_c03690 0.44 -1.6 356,268 + PGA1_c03690 0.45 -0.2 356,271 - PGA1_c03690 0.46 -0.5 356,271 - PGA1_c03690 0.46 +1.6 356,271 - PGA1_c03690 0.46 -0.2 356,276 - PGA1_c03690 0.47 +0.3 356,276 - PGA1_c03690 0.47 +0.1 356,379 - PGA1_c03690 0.66 +0.0 356,389 - PGA1_c03690 0.67 +1.8 356,436 - PGA1_c03690 0.76 +0.2 356,441 + PGA1_c03690 0.77 +1.9 356,444 - PGA1_c03690 0.77 +0.9 356,449 - PGA1_c03690 0.78 +1.0 356,519 + +1.2 356,538 - +0.3 356,620 + PGA1_c03700 0.23 +1.0 356,628 - PGA1_c03700 0.26 +1.0 356,628 - PGA1_c03700 0.26 -1.0 356,642 + PGA1_c03700 0.33 +1.3 356,642 + PGA1_c03700 0.33 -0.6 356,650 - PGA1_c03700 0.37 +1.8 356,658 + PGA1_c03700 0.41 -1.2 356,736 + PGA1_c03700 0.79 +0.8 356,751 + PGA1_c03700 0.87 -0.3 356,759 - -2.2 356,780 + +0.9 356,780 + +0.8 356,787 - +0.6 356,788 - -1.0 356,789 + -0.0 356,792 - -0.2 356,797 - +1.1 356,797 - -1.4 356,869 - -0.2 356,937 + PGA1_c03710 0.16 +2.3 356,937 + PGA1_c03710 0.16 +0.8 356,945 - PGA1_c03710 0.16 +1.3
Or see this region's nucleotide sequence