Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3490 and HP15_3491 are separated by 161 nucleotides HP15_3491 and HP15_3492 are separated by 77 nucleotides HP15_3492 and HP15_3493 are separated by 215 nucleotides
HP15_3490: HP15_3490 - signal recognition particle-docking protein FtsY, at 3,674,996 to 3,676,189
_3490
HP15_3491: HP15_3491 - conserved hypothetical protein, at 3,676,351 to 3,677,001
_3491
HP15_3492: HP15_3492 - fatty acid desaturase, at 3,677,079 to 3,678,257
_3492
HP15_3493: HP15_3493 - formamidopyrimidine-DNA glycosylase, at 3,678,473 to 3,679,210
_3493
Position (kb)
3677
3678
3679 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3676.249 kb on + strand at 3676.317 kb on + strand at 3676.384 kb on - strand at 3676.423 kb on + strand, within HP15_3491 at 3676.475 kb on + strand, within HP15_3491 at 3676.513 kb on - strand, within HP15_3491 at 3676.540 kb on + strand, within HP15_3491 at 3676.563 kb on - strand, within HP15_3491 at 3676.659 kb on + strand, within HP15_3491 at 3676.672 kb on - strand, within HP15_3491 at 3676.674 kb on + strand, within HP15_3491 at 3676.674 kb on + strand, within HP15_3491 at 3676.676 kb on + strand, within HP15_3491 at 3676.682 kb on - strand, within HP15_3491 at 3676.741 kb on - strand, within HP15_3491 at 3676.893 kb on - strand, within HP15_3491 at 3676.893 kb on - strand, within HP15_3491 at 3676.972 kb on - strand at 3676.982 kb on - strand at 3677.104 kb on + strand at 3677.126 kb on + strand at 3677.274 kb on + strand, within HP15_3492 at 3677.279 kb on + strand, within HP15_3492 at 3677.284 kb on + strand, within HP15_3492 at 3677.342 kb on - strand, within HP15_3492 at 3677.463 kb on + strand, within HP15_3492 at 3677.471 kb on - strand, within HP15_3492 at 3677.471 kb on - strand, within HP15_3492 at 3677.527 kb on + strand, within HP15_3492 at 3677.527 kb on + strand, within HP15_3492 at 3677.527 kb on + strand, within HP15_3492 at 3677.527 kb on + strand, within HP15_3492 at 3677.573 kb on - strand, within HP15_3492 at 3677.596 kb on - strand, within HP15_3492 at 3677.609 kb on + strand, within HP15_3492 at 3677.617 kb on - strand, within HP15_3492 at 3677.648 kb on + strand, within HP15_3492 at 3677.748 kb on - strand, within HP15_3492 at 3677.766 kb on - strand, within HP15_3492 at 3677.778 kb on + strand, within HP15_3492 at 3677.793 kb on + strand, within HP15_3492 at 3677.801 kb on - strand, within HP15_3492 at 3677.848 kb on + strand, within HP15_3492 at 3677.868 kb on + strand, within HP15_3492 at 3677.876 kb on - strand, within HP15_3492 at 3677.892 kb on + strand, within HP15_3492 at 3677.894 kb on + strand, within HP15_3492 at 3677.894 kb on + strand, within HP15_3492 at 3677.912 kb on - strand, within HP15_3492 at 3677.917 kb on - strand, within HP15_3492 at 3677.947 kb on + strand, within HP15_3492 at 3677.950 kb on - strand, within HP15_3492 at 3677.950 kb on - strand, within HP15_3492 at 3677.955 kb on - strand, within HP15_3492 at 3677.962 kb on + strand, within HP15_3492 at 3677.967 kb on + strand, within HP15_3492 at 3677.970 kb on - strand, within HP15_3492 at 3677.975 kb on - strand, within HP15_3492 at 3678.020 kb on - strand, within HP15_3492 at 3678.062 kb on - strand, within HP15_3492 at 3678.081 kb on + strand, within HP15_3492 at 3678.138 kb on + strand, within HP15_3492 at 3678.144 kb on - strand at 3678.241 kb on - strand at 3678.399 kb on + strand at 3678.399 kb on + strand at 3678.399 kb on + strand at 3678.407 kb on - strand at 3678.435 kb on + strand at 3678.435 kb on + strand at 3678.435 kb on + strand at 3678.443 kb on - strand at 3678.496 kb on + strand at 3678.501 kb on + strand at 3678.501 kb on + strand at 3678.501 kb on + strand at 3678.567 kb on - strand, within HP15_3493 at 3678.654 kb on + strand, within HP15_3493 at 3678.694 kb on - strand, within HP15_3493 at 3678.699 kb on + strand, within HP15_3493 at 3678.707 kb on - strand, within HP15_3493 at 3678.713 kb on - strand, within HP15_3493 at 3678.755 kb on - strand, within HP15_3493 at 3678.907 kb on + strand, within HP15_3493 at 3678.915 kb on - strand, within HP15_3493 at 3678.952 kb on + strand, within HP15_3493 at 3678.980 kb on + strand, within HP15_3493 at 3678.992 kb on - strand, within HP15_3493 at 3678.994 kb on + strand, within HP15_3493 at 3679.002 kb on - strand, within HP15_3493 at 3679.047 kb on + strand, within HP15_3493 at 3679.055 kb on - strand, within HP15_3493 at 3679.096 kb on + strand, within HP15_3493 at 3679.104 kb on - strand, within HP15_3493 at 3679.106 kb on + strand, within HP15_3493
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 3,676,249 + -1.0 3,676,317 + -0.1 3,676,384 - +0.3 3,676,423 + HP15_3491 0.11 +0.3 3,676,475 + HP15_3491 0.19 +0.1 3,676,513 - HP15_3491 0.25 +1.2 3,676,540 + HP15_3491 0.29 -0.9 3,676,563 - HP15_3491 0.33 +0.4 3,676,659 + HP15_3491 0.47 -1.0 3,676,672 - HP15_3491 0.49 -1.5 3,676,674 + HP15_3491 0.50 +1.0 3,676,674 + HP15_3491 0.50 -0.1 3,676,676 + HP15_3491 0.50 -0.1 3,676,682 - HP15_3491 0.51 -0.7 3,676,741 - HP15_3491 0.60 -0.5 3,676,893 - HP15_3491 0.83 +1.3 3,676,893 - HP15_3491 0.83 -0.4 3,676,972 - -0.2 3,676,982 - -0.4 3,677,104 + +0.3 3,677,126 + +0.6 3,677,274 + HP15_3492 0.17 +2.2 3,677,279 + HP15_3492 0.17 +0.4 3,677,284 + HP15_3492 0.17 +0.2 3,677,342 - HP15_3492 0.22 +0.4 3,677,463 + HP15_3492 0.33 +2.2 3,677,471 - HP15_3492 0.33 +0.1 3,677,471 - HP15_3492 0.33 +1.2 3,677,527 + HP15_3492 0.38 -0.1 3,677,527 + HP15_3492 0.38 +1.0 3,677,527 + HP15_3492 0.38 -0.4 3,677,527 + HP15_3492 0.38 +0.9 3,677,573 - HP15_3492 0.42 -0.1 3,677,596 - HP15_3492 0.44 +0.8 3,677,609 + HP15_3492 0.45 +0.4 3,677,617 - HP15_3492 0.46 +0.2 3,677,648 + HP15_3492 0.48 +0.5 3,677,748 - HP15_3492 0.57 -0.2 3,677,766 - HP15_3492 0.58 +0.2 3,677,778 + HP15_3492 0.59 -0.4 3,677,793 + HP15_3492 0.61 +0.6 3,677,801 - HP15_3492 0.61 -1.7 3,677,848 + HP15_3492 0.65 -0.9 3,677,868 + HP15_3492 0.67 +0.9 3,677,876 - HP15_3492 0.68 -0.7 3,677,892 + HP15_3492 0.69 +0.2 3,677,894 + HP15_3492 0.69 -0.0 3,677,894 + HP15_3492 0.69 +0.4 3,677,912 - HP15_3492 0.71 +1.1 3,677,917 - HP15_3492 0.71 -0.1 3,677,947 + HP15_3492 0.74 +0.0 3,677,950 - HP15_3492 0.74 +0.2 3,677,950 - HP15_3492 0.74 -1.6 3,677,955 - HP15_3492 0.74 +1.4 3,677,962 + HP15_3492 0.75 +0.2 3,677,967 + HP15_3492 0.75 +0.1 3,677,970 - HP15_3492 0.76 +2.1 3,677,975 - HP15_3492 0.76 +1.2 3,678,020 - HP15_3492 0.80 +0.1 3,678,062 - HP15_3492 0.83 -0.3 3,678,081 + HP15_3492 0.85 -0.5 3,678,138 + HP15_3492 0.90 -0.0 3,678,144 - -0.5 3,678,241 - +0.6 3,678,399 + +0.1 3,678,399 + -0.1 3,678,399 + +0.1 3,678,407 - -0.6 3,678,435 + +0.2 3,678,435 + -0.3 3,678,435 + -0.3 3,678,443 - +0.1 3,678,496 + +0.5 3,678,501 + +0.2 3,678,501 + -0.1 3,678,501 + -0.8 3,678,567 - HP15_3493 0.13 -0.9 3,678,654 + HP15_3493 0.25 -1.6 3,678,694 - HP15_3493 0.30 +1.4 3,678,699 + HP15_3493 0.31 -0.5 3,678,707 - HP15_3493 0.32 -1.8 3,678,713 - HP15_3493 0.33 +1.2 3,678,755 - HP15_3493 0.38 +0.2 3,678,907 + HP15_3493 0.59 +0.2 3,678,915 - HP15_3493 0.60 +2.0 3,678,952 + HP15_3493 0.65 +0.8 3,678,980 + HP15_3493 0.69 +1.0 3,678,992 - HP15_3493 0.70 -0.4 3,678,994 + HP15_3493 0.71 +0.9 3,679,002 - HP15_3493 0.72 +0.8 3,679,047 + HP15_3493 0.78 -1.7 3,679,055 - HP15_3493 0.79 -1.5 3,679,096 + HP15_3493 0.84 +2.4 3,679,104 - HP15_3493 0.86 -0.8 3,679,106 + HP15_3493 0.86 -0.1
Or see this region's nucleotide sequence