Strain Fitness in Marinobacter adhaerens HP15 around HP15_3121

Experiment: m.b. pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3120 and HP15_3121 are separated by 156 nucleotidesHP15_3121 and HP15_3122 are separated by 324 nucleotides HP15_3120: HP15_3120 - conserved hypothetical protein, at 3,271,903 to 3,273,135 _3120 HP15_3121: HP15_3121 - malate:quinone oxidoreductase, at 3,273,292 to 3,274,773 _3121 HP15_3122: HP15_3122 - citrate transporter, at 3,275,098 to 3,276,348 _3122 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3272.424 kb on + strand, within HP15_3120at 3272.450 kb on + strand, within HP15_3120at 3272.643 kb on - strand, within HP15_3120at 3272.650 kb on - strand, within HP15_3120at 3272.765 kb on + strand, within HP15_3120at 3272.765 kb on + strand, within HP15_3120at 3272.765 kb on + strand, within HP15_3120at 3272.829 kb on + strand, within HP15_3120at 3272.903 kb on - strand, within HP15_3120at 3272.927 kb on - strand, within HP15_3120at 3272.997 kb on - strand, within HP15_3120at 3273.007 kb on - strand, within HP15_3120at 3273.014 kb on + strandat 3273.096 kb on + strandat 3273.162 kb on + strandat 3273.169 kb on - strandat 3273.170 kb on - strandat 3273.261 kb on + strandat 3273.269 kb on - strandat 3273.269 kb on - strandat 3273.342 kb on + strandat 3273.386 kb on - strandat 3273.704 kb on - strand, within HP15_3121at 3273.740 kb on + strand, within HP15_3121at 3273.848 kb on + strand, within HP15_3121at 3273.918 kb on + strand, within HP15_3121at 3274.148 kb on - strand, within HP15_3121at 3274.223 kb on - strand, within HP15_3121at 3274.375 kb on - strand, within HP15_3121at 3274.434 kb on - strand, within HP15_3121at 3274.454 kb on - strand, within HP15_3121at 3274.459 kb on - strand, within HP15_3121at 3274.536 kb on - strand, within HP15_3121at 3274.614 kb on - strand, within HP15_3121at 3274.624 kb on - strand, within HP15_3121at 3274.647 kb on - strandat 3274.647 kb on - strandat 3274.795 kb on - strandat 3274.828 kb on - strandat 3275.002 kb on + strandat 3275.015 kb on + strandat 3275.023 kb on - strandat 3275.039 kb on + strandat 3275.069 kb on - strandat 3275.077 kb on + strandat 3275.174 kb on - strandat 3275.184 kb on + strandat 3275.184 kb on + strandat 3275.189 kb on + strandat 3275.189 kb on + strandat 3275.219 kb on + strandat 3275.259 kb on - strand, within HP15_3122at 3275.342 kb on + strand, within HP15_3122at 3275.432 kb on - strand, within HP15_3122at 3275.543 kb on - strand, within HP15_3122at 3275.561 kb on - strand, within HP15_3122at 3275.579 kb on - strand, within HP15_3122at 3275.698 kb on + strand, within HP15_3122at 3275.726 kb on + strand, within HP15_3122at 3275.726 kb on + strand, within HP15_3122at 3275.726 kb on - strand, within HP15_3122at 3275.734 kb on - strand, within HP15_3122at 3275.750 kb on + strand, within HP15_3122at 3275.752 kb on + strand, within HP15_3122at 3275.770 kb on - strand, within HP15_3122

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH10
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3,272,424 + HP15_3120 0.42 -0.4
3,272,450 + HP15_3120 0.44 -0.1
3,272,643 - HP15_3120 0.60 -0.6
3,272,650 - HP15_3120 0.61 -1.2
3,272,765 + HP15_3120 0.70 -0.6
3,272,765 + HP15_3120 0.70 +0.6
3,272,765 + HP15_3120 0.70 -0.0
3,272,829 + HP15_3120 0.75 -1.1
3,272,903 - HP15_3120 0.81 -0.3
3,272,927 - HP15_3120 0.83 +0.5
3,272,997 - HP15_3120 0.89 -0.3
3,273,007 - HP15_3120 0.90 -1.2
3,273,014 + -0.3
3,273,096 + +0.3
3,273,162 + +2.0
3,273,169 - -0.2
3,273,170 - +1.2
3,273,261 + -0.2
3,273,269 - +0.2
3,273,269 - -0.4
3,273,342 + +1.0
3,273,386 - +1.1
3,273,704 - HP15_3121 0.28 +3.1
3,273,740 + HP15_3121 0.30 +1.3
3,273,848 + HP15_3121 0.38 +1.1
3,273,918 + HP15_3121 0.42 +0.4
3,274,148 - HP15_3121 0.58 +0.8
3,274,223 - HP15_3121 0.63 +1.4
3,274,375 - HP15_3121 0.73 +1.9
3,274,434 - HP15_3121 0.77 +0.9
3,274,454 - HP15_3121 0.78 +1.7
3,274,459 - HP15_3121 0.79 +1.6
3,274,536 - HP15_3121 0.84 -1.0
3,274,614 - HP15_3121 0.89 +3.2
3,274,624 - HP15_3121 0.90 +0.2
3,274,647 - +0.8
3,274,647 - +1.3
3,274,795 - +0.7
3,274,828 - +1.8
3,275,002 + -0.4
3,275,015 + +0.1
3,275,023 - +0.2
3,275,039 + -0.3
3,275,069 - -0.6
3,275,077 + -0.4
3,275,174 - +0.5
3,275,184 + +0.0
3,275,184 + -0.4
3,275,189 + +0.1
3,275,189 + +0.3
3,275,219 + -0.4
3,275,259 - HP15_3122 0.13 +2.2
3,275,342 + HP15_3122 0.20 +0.1
3,275,432 - HP15_3122 0.27 +2.7
3,275,543 - HP15_3122 0.36 +0.5
3,275,561 - HP15_3122 0.37 +0.9
3,275,579 - HP15_3122 0.38 -0.2
3,275,698 + HP15_3122 0.48 +0.1
3,275,726 + HP15_3122 0.50 -0.2
3,275,726 + HP15_3122 0.50 -0.5
3,275,726 - HP15_3122 0.50 +1.3
3,275,734 - HP15_3122 0.51 +0.3
3,275,750 + HP15_3122 0.52 -1.5
3,275,752 + HP15_3122 0.52 -2.6
3,275,770 - HP15_3122 0.54 +0.4

Or see this region's nucleotide sequence