Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3120 and HP15_3121 are separated by 156 nucleotides HP15_3121 and HP15_3122 are separated by 324 nucleotides
HP15_3120: HP15_3120 - conserved hypothetical protein, at 3,271,903 to 3,273,135
_3120
HP15_3121: HP15_3121 - malate:quinone oxidoreductase, at 3,273,292 to 3,274,773
_3121
HP15_3122: HP15_3122 - citrate transporter, at 3,275,098 to 3,276,348
_3122
Position (kb)
3273
3274
3275 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3272.424 kb on + strand, within HP15_3120 at 3272.450 kb on + strand, within HP15_3120 at 3272.643 kb on - strand, within HP15_3120 at 3272.650 kb on - strand, within HP15_3120 at 3272.765 kb on + strand, within HP15_3120 at 3272.765 kb on + strand, within HP15_3120 at 3272.765 kb on + strand, within HP15_3120 at 3272.829 kb on + strand, within HP15_3120 at 3272.903 kb on - strand, within HP15_3120 at 3272.927 kb on - strand, within HP15_3120 at 3272.997 kb on - strand, within HP15_3120 at 3273.007 kb on - strand, within HP15_3120 at 3273.014 kb on + strand at 3273.096 kb on + strand at 3273.162 kb on + strand at 3273.169 kb on - strand at 3273.170 kb on - strand at 3273.261 kb on + strand at 3273.269 kb on - strand at 3273.269 kb on - strand at 3273.342 kb on + strand at 3273.386 kb on - strand at 3273.704 kb on - strand, within HP15_3121 at 3273.740 kb on + strand, within HP15_3121 at 3273.848 kb on + strand, within HP15_3121 at 3273.918 kb on + strand, within HP15_3121 at 3274.148 kb on - strand, within HP15_3121 at 3274.223 kb on - strand, within HP15_3121 at 3274.375 kb on - strand, within HP15_3121 at 3274.434 kb on - strand, within HP15_3121 at 3274.454 kb on - strand, within HP15_3121 at 3274.459 kb on - strand, within HP15_3121 at 3274.536 kb on - strand, within HP15_3121 at 3274.614 kb on - strand, within HP15_3121 at 3274.624 kb on - strand, within HP15_3121 at 3274.647 kb on - strand at 3274.647 kb on - strand at 3274.795 kb on - strand at 3274.828 kb on - strand at 3275.002 kb on + strand at 3275.015 kb on + strand at 3275.023 kb on - strand at 3275.039 kb on + strand at 3275.069 kb on - strand at 3275.077 kb on + strand at 3275.174 kb on - strand at 3275.184 kb on + strand at 3275.184 kb on + strand at 3275.189 kb on + strand at 3275.189 kb on + strand at 3275.219 kb on + strand at 3275.259 kb on - strand, within HP15_3122 at 3275.342 kb on + strand, within HP15_3122 at 3275.432 kb on - strand, within HP15_3122 at 3275.543 kb on - strand, within HP15_3122 at 3275.561 kb on - strand, within HP15_3122 at 3275.579 kb on - strand, within HP15_3122 at 3275.698 kb on + strand, within HP15_3122 at 3275.726 kb on + strand, within HP15_3122 at 3275.726 kb on + strand, within HP15_3122 at 3275.726 kb on - strand, within HP15_3122 at 3275.734 kb on - strand, within HP15_3122 at 3275.750 kb on + strand, within HP15_3122 at 3275.752 kb on + strand, within HP15_3122 at 3275.770 kb on - strand, within HP15_3122
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 3,272,424 + HP15_3120 0.42 -0.4 3,272,450 + HP15_3120 0.44 -0.1 3,272,643 - HP15_3120 0.60 -0.6 3,272,650 - HP15_3120 0.61 -1.2 3,272,765 + HP15_3120 0.70 -0.6 3,272,765 + HP15_3120 0.70 +0.6 3,272,765 + HP15_3120 0.70 -0.0 3,272,829 + HP15_3120 0.75 -1.1 3,272,903 - HP15_3120 0.81 -0.3 3,272,927 - HP15_3120 0.83 +0.5 3,272,997 - HP15_3120 0.89 -0.3 3,273,007 - HP15_3120 0.90 -1.2 3,273,014 + -0.3 3,273,096 + +0.3 3,273,162 + +2.0 3,273,169 - -0.2 3,273,170 - +1.2 3,273,261 + -0.2 3,273,269 - +0.2 3,273,269 - -0.4 3,273,342 + +1.0 3,273,386 - +1.1 3,273,704 - HP15_3121 0.28 +3.1 3,273,740 + HP15_3121 0.30 +1.3 3,273,848 + HP15_3121 0.38 +1.1 3,273,918 + HP15_3121 0.42 +0.4 3,274,148 - HP15_3121 0.58 +0.8 3,274,223 - HP15_3121 0.63 +1.4 3,274,375 - HP15_3121 0.73 +1.9 3,274,434 - HP15_3121 0.77 +0.9 3,274,454 - HP15_3121 0.78 +1.7 3,274,459 - HP15_3121 0.79 +1.6 3,274,536 - HP15_3121 0.84 -1.0 3,274,614 - HP15_3121 0.89 +3.2 3,274,624 - HP15_3121 0.90 +0.2 3,274,647 - +0.8 3,274,647 - +1.3 3,274,795 - +0.7 3,274,828 - +1.8 3,275,002 + -0.4 3,275,015 + +0.1 3,275,023 - +0.2 3,275,039 + -0.3 3,275,069 - -0.6 3,275,077 + -0.4 3,275,174 - +0.5 3,275,184 + +0.0 3,275,184 + -0.4 3,275,189 + +0.1 3,275,189 + +0.3 3,275,219 + -0.4 3,275,259 - HP15_3122 0.13 +2.2 3,275,342 + HP15_3122 0.20 +0.1 3,275,432 - HP15_3122 0.27 +2.7 3,275,543 - HP15_3122 0.36 +0.5 3,275,561 - HP15_3122 0.37 +0.9 3,275,579 - HP15_3122 0.38 -0.2 3,275,698 + HP15_3122 0.48 +0.1 3,275,726 + HP15_3122 0.50 -0.2 3,275,726 + HP15_3122 0.50 -0.5 3,275,726 - HP15_3122 0.50 +1.3 3,275,734 - HP15_3122 0.51 +0.3 3,275,750 + HP15_3122 0.52 -1.5 3,275,752 + HP15_3122 0.52 -2.6 3,275,770 - HP15_3122 0.54 +0.4
Or see this region's nucleotide sequence