Strain Fitness in Marinobacter adhaerens HP15 around HP15_2995

Experiment: m.b. pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2994 and HP15_2995 are separated by 9 nucleotidesHP15_2995 and HP15_2996 are separated by 107 nucleotides HP15_2994: HP15_2994 - polynucleotide adenylyltransferase/metal dependent phosphohydrolase, at 3,137,372 to 3,138,493 _2994 HP15_2995: HP15_2995 - short-chain dehydrogenase/reductase SDR, at 3,138,503 to 3,139,249 _2995 HP15_2996: HP15_2996 - acetyl-CoA acetyltransferase, at 3,139,357 to 3,140,553 _2996 Position (kb) 3138 3139 3140Strain fitness (log2 ratio) -1 0 1 2at 3138.487 kb on + strandat 3138.495 kb on - strandat 3138.573 kb on - strandat 3138.587 kb on + strand, within HP15_2995at 3138.676 kb on - strand, within HP15_2995at 3138.745 kb on - strand, within HP15_2995at 3138.789 kb on + strand, within HP15_2995at 3138.967 kb on - strand, within HP15_2995at 3139.052 kb on - strand, within HP15_2995at 3139.056 kb on + strand, within HP15_2995at 3139.127 kb on + strand, within HP15_2995at 3139.183 kb on - strandat 3139.230 kb on + strandat 3139.404 kb on + strandat 3139.458 kb on + strandat 3139.474 kb on - strandat 3139.657 kb on + strand, within HP15_2996at 3139.714 kb on + strand, within HP15_2996at 3139.826 kb on + strand, within HP15_2996at 3139.980 kb on - strand, within HP15_2996at 3139.992 kb on + strand, within HP15_2996at 3139.992 kb on + strand, within HP15_2996at 3140.050 kb on + strand, within HP15_2996at 3140.058 kb on - strand, within HP15_2996at 3140.156 kb on - strand, within HP15_2996

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH10
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3,138,487 + -1.7
3,138,495 - +0.6
3,138,573 - -0.6
3,138,587 + HP15_2995 0.11 -0.8
3,138,676 - HP15_2995 0.23 -0.5
3,138,745 - HP15_2995 0.32 -1.0
3,138,789 + HP15_2995 0.38 -1.0
3,138,967 - HP15_2995 0.62 -1.1
3,139,052 - HP15_2995 0.73 -0.1
3,139,056 + HP15_2995 0.74 -0.6
3,139,127 + HP15_2995 0.84 +0.7
3,139,183 - +0.6
3,139,230 + +0.2
3,139,404 + +0.3
3,139,458 + +0.7
3,139,474 - -0.3
3,139,657 + HP15_2996 0.25 +1.1
3,139,714 + HP15_2996 0.30 -0.3
3,139,826 + HP15_2996 0.39 +1.3
3,139,980 - HP15_2996 0.52 +0.8
3,139,992 + HP15_2996 0.53 +0.2
3,139,992 + HP15_2996 0.53 +2.2
3,140,050 + HP15_2996 0.58 +0.8
3,140,058 - HP15_2996 0.59 +0.6
3,140,156 - HP15_2996 0.67 +0.3

Or see this region's nucleotide sequence