Strain Fitness in Marinobacter adhaerens HP15 around HP15_2651

Experiment: m.b. pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2649 and HP15_2650 overlap by 4 nucleotidesHP15_2650 and HP15_2651 are separated by 105 nucleotidesHP15_2651 and HP15_2652 are separated by 105 nucleotidesHP15_2652 and HP15_2653 overlap by 14 nucleotides HP15_2649: HP15_2649 - alpha/beta hydrolase fold protein, at 2,799,583 to 2,800,518 _2649 HP15_2650: HP15_2650 - selenoprotein W-related protein, at 2,800,515 to 2,800,805 _2650 HP15_2651: HP15_2651 - NADH:flavin oxidoreductase/NADH oxidase, at 2,800,911 to 2,802,011 _2651 HP15_2652: HP15_2652 - zinc/iron permease, at 2,802,117 to 2,802,902 _2652 HP15_2653: HP15_2653 - transcriptional regulator, LysR family protein, at 2,802,889 to 2,803,797 _2653 Position (kb) 2800 2801 2802 2803Strain fitness (log2 ratio) -1 0 1 2at 2799.918 kb on - strand, within HP15_2649at 2799.924 kb on - strand, within HP15_2649at 2800.014 kb on + strand, within HP15_2649at 2800.022 kb on - strand, within HP15_2649at 2800.120 kb on - strand, within HP15_2649at 2800.212 kb on + strand, within HP15_2649at 2800.305 kb on - strand, within HP15_2649at 2800.600 kb on - strand, within HP15_2650at 2800.664 kb on + strand, within HP15_2650at 2800.765 kb on + strand, within HP15_2650at 2800.773 kb on - strand, within HP15_2650at 2800.829 kb on - strandat 2800.870 kb on + strandat 2800.918 kb on + strandat 2801.077 kb on - strand, within HP15_2651at 2801.101 kb on + strand, within HP15_2651at 2801.188 kb on - strand, within HP15_2651at 2801.234 kb on + strand, within HP15_2651at 2801.234 kb on + strand, within HP15_2651at 2801.234 kb on + strand, within HP15_2651at 2801.234 kb on + strand, within HP15_2651at 2801.442 kb on + strand, within HP15_2651at 2801.479 kb on + strand, within HP15_2651at 2801.479 kb on + strand, within HP15_2651at 2801.614 kb on - strand, within HP15_2651at 2801.748 kb on + strand, within HP15_2651at 2801.791 kb on + strand, within HP15_2651at 2801.799 kb on - strand, within HP15_2651at 2801.799 kb on - strand, within HP15_2651at 2801.799 kb on - strand, within HP15_2651at 2802.223 kb on + strand, within HP15_2652at 2802.395 kb on - strand, within HP15_2652at 2802.490 kb on + strand, within HP15_2652at 2802.588 kb on + strand, within HP15_2652at 2802.707 kb on + strand, within HP15_2652at 2802.899 kb on - strandat 2802.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH10
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2,799,918 - HP15_2649 0.36 +1.4
2,799,924 - HP15_2649 0.36 -0.3
2,800,014 + HP15_2649 0.46 -0.2
2,800,022 - HP15_2649 0.47 -0.5
2,800,120 - HP15_2649 0.57 +1.6
2,800,212 + HP15_2649 0.67 -0.3
2,800,305 - HP15_2649 0.77 -0.6
2,800,600 - HP15_2650 0.29 +0.4
2,800,664 + HP15_2650 0.51 -0.1
2,800,765 + HP15_2650 0.86 +1.0
2,800,773 - HP15_2650 0.89 +0.1
2,800,829 - -0.7
2,800,870 + +0.3
2,800,918 + -0.9
2,801,077 - HP15_2651 0.15 +1.4
2,801,101 + HP15_2651 0.17 +0.2
2,801,188 - HP15_2651 0.25 +0.5
2,801,234 + HP15_2651 0.29 +1.5
2,801,234 + HP15_2651 0.29 -0.4
2,801,234 + HP15_2651 0.29 +0.7
2,801,234 + HP15_2651 0.29 +2.6
2,801,442 + HP15_2651 0.48 +0.2
2,801,479 + HP15_2651 0.52 +0.8
2,801,479 + HP15_2651 0.52 -0.1
2,801,614 - HP15_2651 0.64 +0.4
2,801,748 + HP15_2651 0.76 -0.3
2,801,791 + HP15_2651 0.80 +0.1
2,801,799 - HP15_2651 0.81 -0.3
2,801,799 - HP15_2651 0.81 -0.5
2,801,799 - HP15_2651 0.81 -0.1
2,802,223 + HP15_2652 0.13 -1.1
2,802,395 - HP15_2652 0.35 -1.2
2,802,490 + HP15_2652 0.47 -0.5
2,802,588 + HP15_2652 0.60 -0.4
2,802,707 + HP15_2652 0.75 +1.1
2,802,899 - +1.6
2,802,924 - +0.0

Or see this region's nucleotide sequence