Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2501 and HP15_2502 are separated by 35 nucleotides HP15_2502 and HP15_2503 are separated by 38 nucleotides HP15_2503 and HP15_2504 are separated by 5 nucleotides
HP15_2501: HP15_2501 - DNA mismatch repair protein mutL, at 2,640,633 to 2,642,527
_2501
HP15_2502: HP15_2502 - N-acetylmuramoyl-L-alanine amidase-like protein, at 2,642,563 to 2,643,921
_2502
HP15_2503: HP15_2503 - protein containing uncharacterized protein family UPF0079, ATPase bacteria domains, at 2,643,960 to 2,644,448
_2503
HP15_2504: HP15_2504 - carbohydrate kinase, YjeF related protein, at 2,644,454 to 2,645,953
_2504
Position (kb) 2642
2643
2644 Strain fitness (log2 ratio) -1
0
1 at 2642.109 kb on - strand, within HP15_2501 at 2642.220 kb on - strand, within HP15_2501 at 2642.221 kb on - strand, within HP15_2501 at 2642.594 kb on + strand at 2642.618 kb on + strand at 2642.753 kb on + strand, within HP15_2502 at 2643.906 kb on + strand at 2644.452 kb on + strand at 2644.551 kb on - strand at 2644.625 kb on - strand, within HP15_2504 at 2644.877 kb on + strand, within HP15_2504
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 2,642,109 - HP15_2501 0.78 +1.3 2,642,220 - HP15_2501 0.84 -0.9 2,642,221 - HP15_2501 0.84 +0.8 2,642,594 + -0.3 2,642,618 + +0.8 2,642,753 + HP15_2502 0.14 -0.9 2,643,906 + +0.5 2,644,452 + +0.1 2,644,551 - -0.4 2,644,625 - HP15_2504 0.11 -0.5 2,644,877 + HP15_2504 0.28 +0.1
Or see this region's nucleotide sequence