Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2128 and HP15_2129 are separated by 21 nucleotides HP15_2129 and HP15_2130 are separated by 8 nucleotides HP15_2130 and HP15_2131 are separated by 137 nucleotides HP15_2131 and HP15_2132 are separated by 9 nucleotides
HP15_2128: HP15_2128 - ABC transporter, permease protein, at 2,228,870 to 2,231,251
_2128
HP15_2129: HP15_2129 - ABC transporter ATP-binding protein-like protein, at 2,231,273 to 2,232,004
_2129
HP15_2130: HP15_2130 - transcriptional regulator, TraR/DksA family, at 2,232,013 to 2,232,333
_2130
HP15_2131: HP15_2131 - ATP-dependent protease HslVU (ClpYQ), ATPase subunit-like protein, at 2,232,471 to 2,232,809
_2131
HP15_2132: HP15_2132 - polyhydroxyalkanoic acid synthase, at 2,232,819 to 2,234,621
_2132
Position (kb)
2231
2232
2233 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2230.329 kb on + strand, within HP15_2128 at 2230.329 kb on + strand, within HP15_2128 at 2230.471 kb on - strand, within HP15_2128 at 2230.520 kb on - strand, within HP15_2128 at 2230.572 kb on + strand, within HP15_2128 at 2230.653 kb on + strand, within HP15_2128 at 2230.843 kb on - strand, within HP15_2128 at 2230.888 kb on - strand, within HP15_2128 at 2230.889 kb on + strand, within HP15_2128 at 2231.005 kb on + strand, within HP15_2128 at 2231.107 kb on + strand at 2231.156 kb on - strand at 2231.171 kb on + strand at 2231.262 kb on + strand at 2231.270 kb on - strand at 2231.292 kb on - strand at 2231.372 kb on + strand, within HP15_2129 at 2231.406 kb on - strand, within HP15_2129 at 2231.424 kb on + strand, within HP15_2129 at 2231.429 kb on + strand, within HP15_2129 at 2231.432 kb on - strand, within HP15_2129 at 2231.502 kb on - strand, within HP15_2129 at 2231.749 kb on + strand, within HP15_2129 at 2231.830 kb on - strand, within HP15_2129 at 2231.915 kb on + strand, within HP15_2129 at 2231.963 kb on + strand at 2232.016 kb on + strand at 2232.016 kb on + strand at 2232.018 kb on + strand at 2232.028 kb on - strand at 2232.080 kb on - strand, within HP15_2130 at 2232.107 kb on + strand, within HP15_2130 at 2232.394 kb on + strand at 2232.433 kb on - strand at 2232.473 kb on - strand at 2232.597 kb on - strand, within HP15_2131 at 2232.597 kb on - strand, within HP15_2131 at 2232.667 kb on - strand, within HP15_2131 at 2232.708 kb on + strand, within HP15_2131 at 2232.765 kb on + strand, within HP15_2131 at 2232.779 kb on + strand at 2232.780 kb on + strand at 2232.787 kb on - strand at 2232.787 kb on - strand at 2232.787 kb on - strand at 2232.819 kb on - strand at 2232.830 kb on + strand at 2232.950 kb on + strand at 2232.950 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 2,230,329 + HP15_2128 0.61 -1.6 2,230,329 + HP15_2128 0.61 -0.7 2,230,471 - HP15_2128 0.67 -0.2 2,230,520 - HP15_2128 0.69 +1.9 2,230,572 + HP15_2128 0.71 -1.3 2,230,653 + HP15_2128 0.75 +1.0 2,230,843 - HP15_2128 0.83 -0.3 2,230,888 - HP15_2128 0.85 -0.0 2,230,889 + HP15_2128 0.85 -0.7 2,231,005 + HP15_2128 0.90 +0.3 2,231,107 + +0.9 2,231,156 - -0.3 2,231,171 + -0.5 2,231,262 + -0.1 2,231,270 - -0.1 2,231,292 - -3.5 2,231,372 + HP15_2129 0.14 -0.5 2,231,406 - HP15_2129 0.18 +0.4 2,231,424 + HP15_2129 0.21 -0.9 2,231,429 + HP15_2129 0.21 +0.9 2,231,432 - HP15_2129 0.22 -1.3 2,231,502 - HP15_2129 0.31 +1.4 2,231,749 + HP15_2129 0.65 +1.0 2,231,830 - HP15_2129 0.76 -0.2 2,231,915 + HP15_2129 0.88 -1.0 2,231,963 + -0.4 2,232,016 + +0.9 2,232,016 + +0.2 2,232,018 + +0.0 2,232,028 - +0.6 2,232,080 - HP15_2130 0.21 +1.4 2,232,107 + HP15_2130 0.29 +0.7 2,232,394 + +0.7 2,232,433 - -0.9 2,232,473 - +0.0 2,232,597 - HP15_2131 0.37 -0.1 2,232,597 - HP15_2131 0.37 -2.5 2,232,667 - HP15_2131 0.58 -0.8 2,232,708 + HP15_2131 0.70 +0.4 2,232,765 + HP15_2131 0.87 -0.8 2,232,779 + +0.1 2,232,780 + -0.6 2,232,787 - -0.1 2,232,787 - -0.8 2,232,787 - -0.3 2,232,819 - -1.3 2,232,830 + +0.4 2,232,950 + -0.0 2,232,950 + -0.5
Or see this region's nucleotide sequence