Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20190

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
2,093,535	-		PGA1_c20180	0.39	-1.6
2,093,568	+		PGA1_c20180	0.42	-0.6
2,093,590	+		PGA1_c20180	0.45	-1.3
2,093,614	-		PGA1_c20180	0.47	-0.5
2,093,630	+		PGA1_c20180	0.48	-1.6
2,093,638	-		PGA1_c20180	0.49	-1.4
2,093,650	+		PGA1_c20180	0.50	-0.6
2,093,650	+		PGA1_c20180	0.50	-2.4
2,093,658	-		PGA1_c20180	0.51	-1.3
2,093,675	+		PGA1_c20180	0.52	-1.3
2,093,786	-		PGA1_c20180	0.63	+0.1
2,093,788	+		PGA1_c20180	0.63	+0.6
2,093,788	+		PGA1_c20180	0.63	-1.7
2,093,788	+		PGA1_c20180	0.63	-1.1
2,093,796	-		PGA1_c20180	0.64	+0.0
2,093,805	+		PGA1_c20180	0.64	-1.4
2,093,824	+		PGA1_c20180	0.66	-0.3
2,093,865	+		PGA1_c20180	0.70	+0.0
2,093,879	-		PGA1_c20180	0.71	+0.2
2,093,884	-		PGA1_c20180	0.72	-1.1
2,093,916	-		PGA1_c20180	0.75	-2.1
2,093,923	+		PGA1_c20180	0.75	-1.3
2,093,923	+		PGA1_c20180	0.75	-1.9
2,093,926	-		PGA1_c20180	0.76	-2.4
2,094,008	-		PGA1_c20180	0.83	-1.3
2,094,047	+		PGA1_c20180	0.87	+2.0
2,094,055	-		PGA1_c20180	0.87	-0.3
2,094,055	-		PGA1_c20180	0.87	-1.7
2,094,083	-				-1.1
2,094,096	+				-1.7
2,094,103	-				-1.1
2,094,104	-				-1.6
2,094,104	-				-1.0
2,094,104	-				-0.8
2,094,104	-				+0.0
2,094,104	-				-1.7
2,094,104	-				-0.7
2,094,111	-				+0.0
2,094,114	-				+0.0
2,094,115	-				-2.0
2,094,139	-				+0.4
2,094,149	+				+0.0
2,094,157	+				-1.9
2,094,157	-				+0.6
2,094,185	+				-1.0
2,094,185	+				-2.0
2,094,193	-				+0.6
2,094,193	-				+1.0
2,094,200	-				-1.8
2,094,200	-				-2.6
2,094,227	-				-1.0
2,094,227	-				-0.3
2,094,244	-				-1.7
2,094,254	+				-0.6
2,094,254	+				-1.8
2,094,254	+				+1.8
2,094,254	+				-2.1
2,094,254	+				-1.1
2,094,254	+				+0.7
2,094,258	-				+0.2
2,094,262	-				-1.0
2,094,262	-				-0.3
2,094,262	-				-0.6
2,094,273	-				-0.3
2,094,288	+				-1.6
2,094,288	+				-0.3
2,094,288	+				-1.6
2,094,296	-				+0.3
2,094,346	+				-0.5
2,094,346	+				-0.6
2,094,346	+				-0.9
2,094,346	+				-1.4
2,094,354	-				+0.1
2,094,354	-				+0.2
2,094,396	+				-0.8
2,094,444	+				-1.1
2,094,494	+				-1.9
2,094,510	-				-0.9
2,094,554	-				-2.1
2,094,557	-				-2.2
2,094,677	+		PGA1_c20190	0.16	-0.8
2,094,681	-		PGA1_c20190	0.17	-1.3
2,094,685	-		PGA1_c20190	0.17	-1.7
2,094,714	+		PGA1_c20190	0.19	-0.6
2,094,783	+		PGA1_c20190	0.24	-1.0
2,094,786	-		PGA1_c20190	0.24	+2.3
2,094,788	+		PGA1_c20190	0.24	+0.4
2,094,793	+		PGA1_c20190	0.25	-0.2
2,094,793	+		PGA1_c20190	0.25	-0.7
2,094,842	-		PGA1_c20190	0.28	-1.6
2,094,842	-		PGA1_c20190	0.28	-1.0
2,094,856	-		PGA1_c20190	0.29	+1.0
2,094,892	+		PGA1_c20190	0.31	-0.6
2,094,909	-		PGA1_c20190	0.33	+0.1
2,094,958	+		PGA1_c20190	0.36	+0.2
2,094,975	-		PGA1_c20190	0.37	-0.9
2,094,975	-		PGA1_c20190	0.37	-0.3
2,095,017	+		PGA1_c20190	0.40	-0.8
2,095,025	-		PGA1_c20190	0.41	-0.4
2,095,039	+		PGA1_c20190	0.42	-1.1
2,095,118	-		PGA1_c20190	0.47	-0.8
2,095,134	+		PGA1_c20190	0.48	-1.4
2,095,142	-		PGA1_c20190	0.49	-0.1
2,095,180	+		PGA1_c20190	0.52	-1.3
2,095,281	+		PGA1_c20190	0.59	-2.2
2,095,289	-		PGA1_c20190	0.59	-0.6
2,095,346	-		PGA1_c20190	0.63	-1.8
2,095,346	-		PGA1_c20190	0.63	+0.4
2,095,359	+		PGA1_c20190	0.64	+0.1
2,095,359	+		PGA1_c20190	0.64	-1.6
2,095,359	+		PGA1_c20190	0.64	-0.1
2,095,362	-		PGA1_c20190	0.64	-2.2
2,095,367	-		PGA1_c20190	0.65	-1.3
2,095,367	-		PGA1_c20190	0.65	-2.1
2,095,396	+		PGA1_c20190	0.67	-0.9
2,095,404	-		PGA1_c20190	0.67	-1.3
2,095,404	-		PGA1_c20190	0.67	-0.3
2,095,591	+		PGA1_c20190	0.80	-2.0
2,095,599	-		PGA1_c20190	0.81	-0.7
2,095,612	+		PGA1_c20190	0.82	-0.8
2,095,620	-		PGA1_c20190	0.82	-0.0
2,095,620	-		PGA1_c20190	0.82	-0.4
2,095,683	+		PGA1_c20190	0.87	-1.6
2,095,683	+		PGA1_c20190	0.87	-1.3
2,095,691	-		PGA1_c20190	0.87	-1.0
2,095,691	-		PGA1_c20190	0.87	-1.8
2,095,698	+		PGA1_c20190	0.88	-0.8
2,095,705	+		PGA1_c20190	0.88	-1.6
2,095,750	-				-1.4
2,095,750	-				-0.8
2,095,779	+				+0.1
2,095,868	+				-1.4
2,095,907	+				-0.7
2,095,912	+				-0.4
2,095,931	+				+0.0
2,095,936	+				+1.0
2,096,044	-		PGA1_c20200	0.15	+0.5
2,096,051	-		PGA1_c20200	0.16	-0.6
2,096,072	+		PGA1_c20200	0.19	+2.0
2,096,106	-		PGA1_c20200	0.24	-1.1
2,096,118	+		PGA1_c20200	0.26	-0.6
2,096,126	-		PGA1_c20200	0.27	-0.2
2,096,136	-		PGA1_c20200	0.29	-1.9
2,096,191	+		PGA1_c20200	0.37	-1.3
2,096,205	+		PGA1_c20200	0.40	+0.1
2,096,205	+		PGA1_c20200	0.40	-1.2
2,096,240	+		PGA1_c20200	0.45	-1.1
2,096,272	-		PGA1_c20200	0.50	+1.0
2,096,272	-		PGA1_c20200	0.50	-1.1
2,096,366	+		PGA1_c20200	0.64	-2.7
2,096,429	+		PGA1_c20200	0.74	+0.4
2,096,444	+		PGA1_c20200	0.77	+0.2
2,096,445	+		PGA1_c20200	0.77	+0.0
2,096,445	+		PGA1_c20200	0.77	-0.6
2,096,445	+		PGA1_c20200	0.77	-1.0
2,096,453	-		PGA1_c20200	0.78	+1.0
2,096,466	+		PGA1_c20200	0.80	-1.0
2,096,476	+		PGA1_c20200	0.82	-1.3
2,096,501	+		PGA1_c20200	0.85	-2.0
2,096,530	+				-2.1
2,096,530	+				-1.7
2,096,530	+				-1.0
2,096,538	-				-1.1
2,096,611	+				+1.8
2,096,616	+				-0.1
2,096,715	-				+2.6
2,096,720	+				-1.8
2,096,721	+				+0.4
2,096,721	+				+0.2
2,096,721	+				+1.2
2,096,721	+				+0.3
2,096,721	+				+0.0
2,096,721	+				-1.3
2,096,721	+				+0.8
2,096,721	+				+2.0
2,096,721	+				-0.2
2,096,721	+				-0.7
2,096,721	+				+0.0
2,096,729	-				+0.2
2,096,729	-				+0.0
2,096,729	-				+1.0
2,096,729	-				-0.9
2,096,729	-				+0.2
2,096,731	+				-1.3
2,096,731	+				+0.6
2,096,731	+				+0.2
2,096,739	-				-0.1
2,096,739	-				+2.0
2,096,739	-				+0.1
2,096,739	-				-0.2