Strain Fitness in Marinobacter adhaerens HP15 around HP15_1911

Experiment: m.b. pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1910 and HP15_1911 are separated by 39 nucleotidesHP15_1911 and HP15_1912 are separated by 423 nucleotides HP15_1910: HP15_1910 - TPR/glycosyl transferase domain protein, at 2,021,739 to 2,023,139 _1910 HP15_1911: HP15_1911 - beta 1,4-N-acetylgalactosaminyltransferase-transferase-III-like protein, at 2,023,179 to 2,025,203 _1911 HP15_1912: HP15_1912 - polysaccharide biosynthesis protein, at 2,025,627 to 2,026,790 _1912 Position (kb) 2023 2024 2025 2026Strain fitness (log2 ratio) -2 -1 0 1 2at 2022.273 kb on - strand, within HP15_1910at 2022.405 kb on - strand, within HP15_1910at 2022.437 kb on + strand, within HP15_1910at 2022.440 kb on - strand, within HP15_1910at 2022.447 kb on + strand, within HP15_1910at 2022.652 kb on - strand, within HP15_1910at 2022.764 kb on - strand, within HP15_1910at 2022.859 kb on + strandat 2022.941 kb on - strand, within HP15_1910at 2022.979 kb on + strand, within HP15_1910at 2023.100 kb on - strandat 2023.133 kb on + strandat 2023.188 kb on + strandat 2023.269 kb on + strandat 2023.306 kb on - strandat 2023.408 kb on - strand, within HP15_1911at 2023.415 kb on + strand, within HP15_1911at 2023.415 kb on + strand, within HP15_1911at 2023.556 kb on + strand, within HP15_1911at 2023.575 kb on - strand, within HP15_1911at 2023.610 kb on - strand, within HP15_1911at 2023.642 kb on - strand, within HP15_1911at 2023.776 kb on - strand, within HP15_1911at 2023.845 kb on - strand, within HP15_1911at 2023.872 kb on + strand, within HP15_1911at 2023.872 kb on + strand, within HP15_1911at 2023.872 kb on + strand, within HP15_1911at 2023.872 kb on + strand, within HP15_1911at 2023.872 kb on + strand, within HP15_1911at 2023.880 kb on - strand, within HP15_1911at 2023.880 kb on - strand, within HP15_1911at 2023.880 kb on - strand, within HP15_1911at 2023.880 kb on - strand, within HP15_1911at 2024.036 kb on - strand, within HP15_1911at 2024.128 kb on + strand, within HP15_1911at 2024.219 kb on + strand, within HP15_1911at 2024.219 kb on + strand, within HP15_1911at 2024.287 kb on - strand, within HP15_1911at 2024.382 kb on - strand, within HP15_1911at 2024.490 kb on + strand, within HP15_1911at 2024.564 kb on - strand, within HP15_1911at 2024.608 kb on + strand, within HP15_1911at 2024.608 kb on + strand, within HP15_1911at 2024.616 kb on - strand, within HP15_1911at 2024.663 kb on - strand, within HP15_1911at 2024.751 kb on + strand, within HP15_1911at 2024.773 kb on - strand, within HP15_1911at 2024.813 kb on - strand, within HP15_1911at 2025.078 kb on - strandat 2025.098 kb on + strandat 2025.177 kb on - strandat 2025.439 kb on - strandat 2025.522 kb on + strandat 2025.522 kb on + strandat 2025.534 kb on + strandat 2025.544 kb on + strandat 2025.643 kb on - strandat 2025.707 kb on - strandat 2025.783 kb on + strand, within HP15_1912at 2025.791 kb on - strand, within HP15_1912at 2025.813 kb on + strand, within HP15_1912at 2025.927 kb on + strand, within HP15_1912at 2025.946 kb on + strand, within HP15_1912at 2026.018 kb on + strand, within HP15_1912at 2026.036 kb on - strand, within HP15_1912at 2026.052 kb on + strand, within HP15_1912at 2026.060 kb on - strand, within HP15_1912

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH10
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2,022,273 - HP15_1910 0.38 +0.9
2,022,405 - HP15_1910 0.48 -1.4
2,022,437 + HP15_1910 0.50 +0.2
2,022,440 - HP15_1910 0.50 +0.3
2,022,447 + HP15_1910 0.51 +0.2
2,022,652 - HP15_1910 0.65 +0.5
2,022,764 - HP15_1910 0.73 -0.4
2,022,859 + +1.8
2,022,941 - HP15_1910 0.86 -0.3
2,022,979 + HP15_1910 0.89 +0.8
2,023,100 - +0.1
2,023,133 + +0.4
2,023,188 + -0.7
2,023,269 + -0.3
2,023,306 - -0.2
2,023,408 - HP15_1911 0.11 +0.9
2,023,415 + HP15_1911 0.12 +0.7
2,023,415 + HP15_1911 0.12 -0.7
2,023,556 + HP15_1911 0.19 +0.2
2,023,575 - HP15_1911 0.20 +0.6
2,023,610 - HP15_1911 0.21 +1.0
2,023,642 - HP15_1911 0.23 +0.3
2,023,776 - HP15_1911 0.29 -0.8
2,023,845 - HP15_1911 0.33 -0.7
2,023,872 + HP15_1911 0.34 -0.2
2,023,872 + HP15_1911 0.34 -0.8
2,023,872 + HP15_1911 0.34 -0.9
2,023,872 + HP15_1911 0.34 +0.4
2,023,872 + HP15_1911 0.34 -0.3
2,023,880 - HP15_1911 0.35 +0.3
2,023,880 - HP15_1911 0.35 +0.2
2,023,880 - HP15_1911 0.35 -0.8
2,023,880 - HP15_1911 0.35 -0.9
2,024,036 - HP15_1911 0.42 -0.0
2,024,128 + HP15_1911 0.47 -0.7
2,024,219 + HP15_1911 0.51 -1.1
2,024,219 + HP15_1911 0.51 -0.1
2,024,287 - HP15_1911 0.55 +0.1
2,024,382 - HP15_1911 0.59 -1.0
2,024,490 + HP15_1911 0.65 -0.0
2,024,564 - HP15_1911 0.68 +2.5
2,024,608 + HP15_1911 0.71 -0.8
2,024,608 + HP15_1911 0.71 -0.4
2,024,616 - HP15_1911 0.71 -0.0
2,024,663 - HP15_1911 0.73 +0.0
2,024,751 + HP15_1911 0.78 +0.2
2,024,773 - HP15_1911 0.79 -2.1
2,024,813 - HP15_1911 0.81 +0.5
2,025,078 - +0.2
2,025,098 + -0.1
2,025,177 - +0.3
2,025,439 - -0.4
2,025,522 + -1.6
2,025,522 + +0.9
2,025,534 + +0.3
2,025,544 + +1.3
2,025,643 - -0.9
2,025,707 - -0.7
2,025,783 + HP15_1912 0.13 +1.3
2,025,791 - HP15_1912 0.14 -1.3
2,025,813 + HP15_1912 0.16 -0.7
2,025,927 + HP15_1912 0.26 +0.8
2,025,946 + HP15_1912 0.27 -0.6
2,026,018 + HP15_1912 0.34 +0.5
2,026,036 - HP15_1912 0.35 -1.0
2,026,052 + HP15_1912 0.37 +1.1
2,026,060 - HP15_1912 0.37 +0.3

Or see this region's nucleotide sequence