Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1910 and HP15_1911 are separated by 39 nucleotides HP15_1911 and HP15_1912 are separated by 423 nucleotides
HP15_1910: HP15_1910 - TPR/glycosyl transferase domain protein, at 2,021,739 to 2,023,139
_1910
HP15_1911: HP15_1911 - beta 1,4-N-acetylgalactosaminyltransferase-transferase-III-like protein, at 2,023,179 to 2,025,203
_1911
HP15_1912: HP15_1912 - polysaccharide biosynthesis protein, at 2,025,627 to 2,026,790
_1912
Position (kb)
2023
2024
2025
2026 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2022.273 kb on - strand, within HP15_1910 at 2022.405 kb on - strand, within HP15_1910 at 2022.437 kb on + strand, within HP15_1910 at 2022.440 kb on - strand, within HP15_1910 at 2022.447 kb on + strand, within HP15_1910 at 2022.652 kb on - strand, within HP15_1910 at 2022.764 kb on - strand, within HP15_1910 at 2022.859 kb on + strand at 2022.941 kb on - strand, within HP15_1910 at 2022.979 kb on + strand, within HP15_1910 at 2023.100 kb on - strand at 2023.133 kb on + strand at 2023.188 kb on + strand at 2023.269 kb on + strand at 2023.306 kb on - strand at 2023.408 kb on - strand, within HP15_1911 at 2023.415 kb on + strand, within HP15_1911 at 2023.415 kb on + strand, within HP15_1911 at 2023.556 kb on + strand, within HP15_1911 at 2023.575 kb on - strand, within HP15_1911 at 2023.610 kb on - strand, within HP15_1911 at 2023.642 kb on - strand, within HP15_1911 at 2023.776 kb on - strand, within HP15_1911 at 2023.845 kb on - strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2024.036 kb on - strand, within HP15_1911 at 2024.128 kb on + strand, within HP15_1911 at 2024.219 kb on + strand, within HP15_1911 at 2024.219 kb on + strand, within HP15_1911 at 2024.287 kb on - strand, within HP15_1911 at 2024.382 kb on - strand, within HP15_1911 at 2024.490 kb on + strand, within HP15_1911 at 2024.564 kb on - strand, within HP15_1911 at 2024.608 kb on + strand, within HP15_1911 at 2024.608 kb on + strand, within HP15_1911 at 2024.616 kb on - strand, within HP15_1911 at 2024.663 kb on - strand, within HP15_1911 at 2024.751 kb on + strand, within HP15_1911 at 2024.773 kb on - strand, within HP15_1911 at 2024.813 kb on - strand, within HP15_1911 at 2025.078 kb on - strand at 2025.098 kb on + strand at 2025.177 kb on - strand at 2025.439 kb on - strand at 2025.522 kb on + strand at 2025.522 kb on + strand at 2025.534 kb on + strand at 2025.544 kb on + strand at 2025.643 kb on - strand at 2025.707 kb on - strand at 2025.783 kb on + strand, within HP15_1912 at 2025.791 kb on - strand, within HP15_1912 at 2025.813 kb on + strand, within HP15_1912 at 2025.927 kb on + strand, within HP15_1912 at 2025.946 kb on + strand, within HP15_1912 at 2026.018 kb on + strand, within HP15_1912 at 2026.036 kb on - strand, within HP15_1912 at 2026.052 kb on + strand, within HP15_1912 at 2026.060 kb on - strand, within HP15_1912
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 2,022,273 - HP15_1910 0.38 +0.9 2,022,405 - HP15_1910 0.48 -1.4 2,022,437 + HP15_1910 0.50 +0.2 2,022,440 - HP15_1910 0.50 +0.3 2,022,447 + HP15_1910 0.51 +0.2 2,022,652 - HP15_1910 0.65 +0.5 2,022,764 - HP15_1910 0.73 -0.4 2,022,859 + +1.8 2,022,941 - HP15_1910 0.86 -0.3 2,022,979 + HP15_1910 0.89 +0.8 2,023,100 - +0.1 2,023,133 + +0.4 2,023,188 + -0.7 2,023,269 + -0.3 2,023,306 - -0.2 2,023,408 - HP15_1911 0.11 +0.9 2,023,415 + HP15_1911 0.12 +0.7 2,023,415 + HP15_1911 0.12 -0.7 2,023,556 + HP15_1911 0.19 +0.2 2,023,575 - HP15_1911 0.20 +0.6 2,023,610 - HP15_1911 0.21 +1.0 2,023,642 - HP15_1911 0.23 +0.3 2,023,776 - HP15_1911 0.29 -0.8 2,023,845 - HP15_1911 0.33 -0.7 2,023,872 + HP15_1911 0.34 -0.2 2,023,872 + HP15_1911 0.34 -0.8 2,023,872 + HP15_1911 0.34 -0.9 2,023,872 + HP15_1911 0.34 +0.4 2,023,872 + HP15_1911 0.34 -0.3 2,023,880 - HP15_1911 0.35 +0.3 2,023,880 - HP15_1911 0.35 +0.2 2,023,880 - HP15_1911 0.35 -0.8 2,023,880 - HP15_1911 0.35 -0.9 2,024,036 - HP15_1911 0.42 -0.0 2,024,128 + HP15_1911 0.47 -0.7 2,024,219 + HP15_1911 0.51 -1.1 2,024,219 + HP15_1911 0.51 -0.1 2,024,287 - HP15_1911 0.55 +0.1 2,024,382 - HP15_1911 0.59 -1.0 2,024,490 + HP15_1911 0.65 -0.0 2,024,564 - HP15_1911 0.68 +2.5 2,024,608 + HP15_1911 0.71 -0.8 2,024,608 + HP15_1911 0.71 -0.4 2,024,616 - HP15_1911 0.71 -0.0 2,024,663 - HP15_1911 0.73 +0.0 2,024,751 + HP15_1911 0.78 +0.2 2,024,773 - HP15_1911 0.79 -2.1 2,024,813 - HP15_1911 0.81 +0.5 2,025,078 - +0.2 2,025,098 + -0.1 2,025,177 - +0.3 2,025,439 - -0.4 2,025,522 + -1.6 2,025,522 + +0.9 2,025,534 + +0.3 2,025,544 + +1.3 2,025,643 - -0.9 2,025,707 - -0.7 2,025,783 + HP15_1912 0.13 +1.3 2,025,791 - HP15_1912 0.14 -1.3 2,025,813 + HP15_1912 0.16 -0.7 2,025,927 + HP15_1912 0.26 +0.8 2,025,946 + HP15_1912 0.27 -0.6 2,026,018 + HP15_1912 0.34 +0.5 2,026,036 - HP15_1912 0.35 -1.0 2,026,052 + HP15_1912 0.37 +1.1 2,026,060 - HP15_1912 0.37 +0.3
Or see this region's nucleotide sequence