Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18180

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
1,897,140	+		PGA1_c18170	0.50	-0.7
1,897,148	-		PGA1_c18170	0.50	-0.6
1,897,188	+		PGA1_c18170	0.54	-0.6
1,897,188	+		PGA1_c18170	0.54	+0.7
1,897,188	+		PGA1_c18170	0.54	+0.8
1,897,194	-		PGA1_c18170	0.54	-1.0
1,897,196	-		PGA1_c18170	0.54	-0.6
1,897,297	+		PGA1_c18170	0.63	-2.7
1,897,305	-		PGA1_c18170	0.64	+0.5
1,897,401	+		PGA1_c18170	0.73	+0.1
1,897,409	-		PGA1_c18170	0.73	+0.1
1,897,409	-		PGA1_c18170	0.73	-0.5
1,897,410	+		PGA1_c18170	0.73	-0.0
1,897,410	+		PGA1_c18170	0.73	-1.5
1,897,410	+		PGA1_c18170	0.73	+0.2
1,897,418	-		PGA1_c18170	0.74	+1.0
1,897,418	-		PGA1_c18170	0.74	+0.6
1,897,418	-		PGA1_c18170	0.74	+2.0
1,897,418	-		PGA1_c18170	0.74	+1.2
1,897,425	+		PGA1_c18170	0.75	+0.2
1,897,482	+		PGA1_c18170	0.80	-0.0
1,897,491	+		PGA1_c18170	0.81	-0.3
1,897,565	-		PGA1_c18170	0.87	-0.4
1,897,581	-		PGA1_c18170	0.89	+0.1
1,897,720	+				-0.6
1,897,730	+				-0.6
1,897,735	+				-0.0
1,897,738	-				+0.2
1,897,738	-				-0.4
1,897,738	-				-0.5
1,897,738	-				-1.2
1,897,738	-				-2.8
1,897,738	-				-1.2
1,897,747	+				+1.6
1,897,752	+				-0.0
1,897,760	+				+2.0
1,897,762	-				+0.8
1,897,763	-				+1.0
1,897,768	-				-0.2
1,897,774	-				-1.1
1,897,806	-				-0.5
1,897,889	-				-0.2
1,897,899	+				-1.6
1,897,904	+				-1.9
1,897,904	+				-0.3
1,897,904	+				+0.5
1,897,907	-				-0.9
1,897,912	-				-1.0
1,897,912	-				-0.5
1,897,930	-				-1.3
1,897,945	-				+1.3
1,897,969	+				+0.5
1,898,099	-				-0.7
1,898,099	-				+1.2
1,898,174	-				-0.3
1,898,179	-				-2.0
1,898,188	-				-2.0
1,898,212	+				-2.1
1,898,215	-				-0.8
1,898,220	-				-0.0
1,898,241	+				-0.7
1,898,242	-				+0.3
1,898,249	-				+0.4
1,898,258	+				-0.6
1,898,258	+				+0.7
1,898,258	+				-1.6
1,898,259	-				+0.7
1,898,266	-				+0.6
1,898,273	+				+0.3
1,898,342	+		PGA1_c18180	0.10	-1.8
1,898,433	+		PGA1_c18180	0.14	-1.6
1,898,502	+		PGA1_c18180	0.18	+1.6
1,898,548	-		PGA1_c18180	0.20	-0.2
1,898,557	+		PGA1_c18180	0.20	-1.3
1,898,557	+		PGA1_c18180	0.20	+0.2
1,898,562	+		PGA1_c18180	0.20	+0.3
1,898,565	-		PGA1_c18180	0.20	+0.4
1,898,565	-		PGA1_c18180	0.20	-0.1
1,898,565	-		PGA1_c18180	0.20	-0.7
1,898,588	-		PGA1_c18180	0.21	-2.2
1,898,595	+		PGA1_c18180	0.22	-0.0
1,898,694	+		PGA1_c18180	0.26	-0.1
1,898,716	+		PGA1_c18180	0.27	+0.1
1,898,766	+		PGA1_c18180	0.29	+0.4
1,898,786	-		PGA1_c18180	0.30	-0.0
1,898,805	+		PGA1_c18180	0.31	-0.5
1,898,841	+		PGA1_c18180	0.33	-2.8
1,898,856	-		PGA1_c18180	0.34	-1.3
1,898,875	+		PGA1_c18180	0.34	-0.4
1,898,924	+		PGA1_c18180	0.37	-0.8
1,898,934	-		PGA1_c18180	0.37	+0.0
1,899,057	+		PGA1_c18180	0.43	+0.7
1,899,129	+		PGA1_c18180	0.46	-1.2
1,899,203	+		PGA1_c18180	0.49	-0.0
1,899,203	+		PGA1_c18180	0.49	+0.7
1,899,211	-		PGA1_c18180	0.50	-1.0
1,899,211	-		PGA1_c18180	0.50	-0.6
1,899,283	+		PGA1_c18180	0.53	+1.0
1,899,346	-		PGA1_c18180	0.56	-2.3
1,899,378	+		PGA1_c18180	0.57	-1.2
1,899,493	+		PGA1_c18180	0.62	-0.3
1,899,611	+		PGA1_c18180	0.68	+1.6
1,899,618	+		PGA1_c18180	0.68	-0.0
1,899,632	+		PGA1_c18180	0.69	-0.3
1,899,632	+		PGA1_c18180	0.69	-0.2
1,899,632	+		PGA1_c18180	0.69	+1.3
1,899,632	+		PGA1_c18180	0.69	+0.4
1,899,640	-		PGA1_c18180	0.69	-0.6
1,899,640	-		PGA1_c18180	0.69	-0.8
1,899,665	+		PGA1_c18180	0.70	+0.7
1,899,673	-		PGA1_c18180	0.71	-0.6
1,899,673	-		PGA1_c18180	0.71	-0.8
1,899,683	-		PGA1_c18180	0.71	-0.0
1,899,750	+		PGA1_c18180	0.74	+1.2
1,899,792	-		PGA1_c18180	0.76	-0.5
1,899,843	-		PGA1_c18180	0.78	+0.3
1,899,866	+		PGA1_c18180	0.79	-1.4
1,899,881	+		PGA1_c18180	0.80	-0.0
1,899,881	+		PGA1_c18180	0.80	+0.1
1,899,889	-		PGA1_c18180	0.80	-2.3
1,899,938	+		PGA1_c18180	0.83	-1.4
1,899,959	+		PGA1_c18180	0.84	+1.1
1,899,967	-		PGA1_c18180	0.84	-1.0
1,899,967	-		PGA1_c18180	0.84	-0.3
1,899,967	-		PGA1_c18180	0.84	-0.0
1,899,967	-		PGA1_c18180	0.84	+0.2
1,899,978	+		PGA1_c18180	0.84	+1.6
1,899,986	-		PGA1_c18180	0.85	+1.1
1,899,986	-		PGA1_c18180	0.85	+0.7
1,899,988	+		PGA1_c18180	0.85	-0.9
1,899,996	-		PGA1_c18180	0.85	+0.8
1,899,996	-		PGA1_c18180	0.85	-1.6
1,900,016	+		PGA1_c18180	0.86	+1.0
1,900,016	+		PGA1_c18180	0.86	-1.2
1,900,021	+		PGA1_c18180	0.86	+1.0
1,900,021	+		PGA1_c18180	0.86	+1.0
1,900,024	-		PGA1_c18180	0.87	+0.8
1,900,024	-		PGA1_c18180	0.87	-0.3
1,900,024	-		PGA1_c18180	0.87	-1.7
1,900,029	-		PGA1_c18180	0.87	+0.6
1,900,029	-		PGA1_c18180	0.87	+0.2
1,900,039	-		PGA1_c18180	0.87	-2.3
1,900,136	+				+1.1
1,900,144	-				-0.0
1,900,180	+				+0.5
1,900,228	+				+2.1
1,900,233	+				-0.9
1,900,249	+				+1.2
1,900,249	+				-1.5
1,900,257	-				-0.4
1,900,280	-				-2.2
1,900,300	+				-1.7
1,900,327	-				-1.1
1,900,348	+				-1.3
1,900,351	-				-2.3
1,900,358	+				+0.2
1,900,372	-				-0.3
1,900,376	-				-0.5
1,900,394	-				-1.5
1,900,394	-				+1.0
1,900,401	-				-1.3
1,900,411	+				+0.2
1,900,419	-				-0.6
1,900,424	-				-2.0
1,900,447	+				-0.9
1,900,455	-				+0.4
1,900,500	+				+3.0
1,900,595	-				-1.2
1,900,595	-				-1.0
1,900,620	+				-0.0
1,900,628	-				-1.2
1,900,628	-				-1.5
1,900,628	-				-0.7
1,900,639	+				+1.2
1,900,641	-				-1.7
1,900,666	+				+0.5
1,900,699	+				-0.6
1,900,709	-				-2.4
1,900,717	-				+0.6
1,900,721	+				-0.3
1,900,743	-				-2.2
1,900,752	+				-0.3
1,900,760	-				-0.0
1,900,771	-				-0.0
1,900,833	+				+1.0
1,900,833	+				-1.9
1,900,872	+				+0.4
1,900,872	+				+0.1
1,900,880	-				-0.8
1,900,880	-				+0.7
1,900,880	-				-2.0
1,900,896	-				-1.0
1,900,910	+				+0.7
1,900,911	-				-0.2
1,900,918	+				+1.6
1,900,930	+				+0.4
1,900,930	+				-2.3
1,900,930	+				+0.2
1,900,931	+				+0.1
1,900,938	-				-0.2
1,900,938	-				-1.5
1,900,999	+				-0.3
1,901,001	+				-0.1
1,901,009	+				+1.3
1,901,017	-				+1.0
1,901,017	-				-1.3
1,901,018	+				-1.9
1,901,024	-				+0.5
1,901,034	+				+1.6
1,901,044	+				-1.1
1,901,058	+				+1.0
1,901,066	-				-0.4
1,901,069	-				-0.2
1,901,154	+		PGA1_c18195	0.15	-0.7
1,901,154	+		PGA1_c18195	0.15	-0.6
1,901,154	+		PGA1_c18195	0.15	-1.8
1,901,161	+		PGA1_c18195	0.17	+0.2
1,901,162	+		PGA1_c18195	0.17	-1.7
1,901,162	+		PGA1_c18195	0.17	+0.3
1,901,162	+		PGA1_c18195	0.17	+0.6
1,901,162	+		PGA1_c18195	0.17	-0.8
1,901,162	+		PGA1_c18195	0.17	-1.7
1,901,162	+		PGA1_c18195	0.17	-0.8
1,901,162	-		PGA1_c18195	0.17	-0.9
1,901,170	-		PGA1_c18195	0.19	-1.1
1,901,170	-		PGA1_c18195	0.19	-1.7
1,901,170	-		PGA1_c18195	0.19	+2.0
1,901,170	-		PGA1_c18195	0.19	-0.6
1,901,170	-		PGA1_c18195	0.19	-0.2
1,901,170	-		PGA1_c18195	0.19	-1.3
1,901,175	-		PGA1_c18195	0.20	-0.0
1,901,185	+		PGA1_c18195	0.23	-1.5
1,901,186	+		PGA1_c18195	0.23	+0.2
1,901,193	-		PGA1_c18195	0.25	+1.2
1,901,228	+		PGA1_c18195	0.33	+0.8
1,901,240	+		PGA1_c18195	0.36	+0.2
1,901,250	-		PGA1_c18195	0.38	+0.8
1,901,293	+		PGA1_c18195	0.49	-0.3
1,901,293	+		PGA1_c18195	0.49	-0.0
1,901,301	-		PGA1_c18195	0.51	-0.8
1,901,301	-		PGA1_c18195	0.51	+0.7