Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1509 and HP15_1510 are separated by 61 nucleotides HP15_1510 and HP15_1511 are separated by 152 nucleotides HP15_1511 and HP15_1512 are separated by 436 nucleotides
HP15_1509: HP15_1509 - conserved hypothetical protein, at 1,586,036 to 1,586,515
_1509
HP15_1510: HP15_1510 - UspA domain protein, at 1,586,577 to 1,587,008
_1510
HP15_1511: HP15_1511 - conserved hypothetical protein, secreted, at 1,587,161 to 1,587,979
_1511
HP15_1512: HP15_1512 - Enoyl-CoA hydratase (EC 4.2.1.17) (from data) , at 1,588,416 to 1,590,563
_1512
Position (kb)
1587
1588 Strain fitness (log2 ratio)
-1
0
1 at 1586.183 kb on - strand, within HP15_1509 at 1586.226 kb on - strand, within HP15_1509 at 1586.297 kb on + strand, within HP15_1509 at 1586.333 kb on - strand, within HP15_1509 at 1586.333 kb on - strand, within HP15_1509 at 1586.337 kb on - strand, within HP15_1509 at 1586.346 kb on + strand, within HP15_1509 at 1586.380 kb on + strand, within HP15_1509 at 1586.398 kb on - strand, within HP15_1509 at 1586.619 kb on - strand at 1586.716 kb on - strand, within HP15_1510 at 1586.870 kb on - strand, within HP15_1510 at 1586.906 kb on + strand, within HP15_1510 at 1587.181 kb on + strand at 1587.259 kb on + strand, within HP15_1511 at 1587.435 kb on - strand, within HP15_1511 at 1587.441 kb on + strand, within HP15_1511 at 1587.444 kb on - strand, within HP15_1511 at 1587.543 kb on + strand, within HP15_1511 at 1587.561 kb on - strand, within HP15_1511 at 1587.647 kb on - strand, within HP15_1511 at 1587.783 kb on - strand, within HP15_1511 at 1587.792 kb on + strand, within HP15_1511 at 1587.838 kb on - strand, within HP15_1511 at 1587.838 kb on - strand, within HP15_1511 at 1587.893 kb on + strand, within HP15_1511 at 1587.893 kb on + strand, within HP15_1511 at 1588.322 kb on - strand at 1588.386 kb on - strand at 1588.402 kb on + strand at 1588.428 kb on + strand at 1588.428 kb on + strand at 1588.449 kb on - strand at 1588.532 kb on + strand at 1588.571 kb on + strand at 1588.700 kb on + strand, within HP15_1512 at 1588.708 kb on - strand, within HP15_1512 at 1588.740 kb on - strand, within HP15_1512 at 1588.827 kb on - strand, within HP15_1512 at 1588.828 kb on + strand, within HP15_1512 at 1588.929 kb on + strand, within HP15_1512
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 1,586,183 - HP15_1509 0.31 +0.7 1,586,226 - HP15_1509 0.40 +0.2 1,586,297 + HP15_1509 0.54 +0.0 1,586,333 - HP15_1509 0.62 -0.3 1,586,333 - HP15_1509 0.62 +1.1 1,586,337 - HP15_1509 0.63 -0.2 1,586,346 + HP15_1509 0.65 -0.1 1,586,380 + HP15_1509 0.72 -0.1 1,586,398 - HP15_1509 0.75 +0.5 1,586,619 - +0.3 1,586,716 - HP15_1510 0.32 +1.3 1,586,870 - HP15_1510 0.68 +0.8 1,586,906 + HP15_1510 0.76 +0.5 1,587,181 + +1.4 1,587,259 + HP15_1511 0.12 +0.8 1,587,435 - HP15_1511 0.33 -0.1 1,587,441 + HP15_1511 0.34 +0.5 1,587,444 - HP15_1511 0.35 -1.2 1,587,543 + HP15_1511 0.47 +1.0 1,587,561 - HP15_1511 0.49 +0.9 1,587,647 - HP15_1511 0.59 -0.3 1,587,783 - HP15_1511 0.76 -1.7 1,587,792 + HP15_1511 0.77 +0.7 1,587,838 - HP15_1511 0.83 +0.6 1,587,838 - HP15_1511 0.83 -0.1 1,587,893 + HP15_1511 0.89 -0.6 1,587,893 + HP15_1511 0.89 -0.1 1,588,322 - -0.3 1,588,386 - -0.9 1,588,402 + -0.7 1,588,428 + +0.1 1,588,428 + -1.0 1,588,449 - +0.4 1,588,532 + +0.6 1,588,571 + +0.4 1,588,700 + HP15_1512 0.13 +0.4 1,588,708 - HP15_1512 0.14 +0.6 1,588,740 - HP15_1512 0.15 -0.1 1,588,827 - HP15_1512 0.19 -0.1 1,588,828 + HP15_1512 0.19 +1.4 1,588,929 + HP15_1512 0.24 -0.0
Or see this region's nucleotide sequence