Strain Fitness in Marinobacter adhaerens HP15 around HP15_1022

Experiment: m.b. pH10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1020 and HP15_1021 are separated by 154 nucleotidesHP15_1021 and HP15_1022 overlap by 16 nucleotidesHP15_1022 and HP15_1023 are separated by 125 nucleotides HP15_1020: HP15_1020 - methyl-accepting chemotaxis sensory transducer, at 1,035,446 to 1,037,071 _1020 HP15_1021: HP15_1021 - tRNA pseudouridine synthase C, at 1,037,226 to 1,037,969 _1021 HP15_1022: HP15_1022 - sensory box protein/GGDEF domain protein, at 1,037,954 to 1,039,810 _1022 HP15_1023: HP15_1023 - 6-aminohexanoate-cyclic-dimer hydrolase, at 1,039,936 to 1,041,432 _1023 Position (kb) 1037 1038 1039 1040Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1037.214 kb on - strandat 1037.224 kb on - strandat 1037.264 kb on + strandat 1037.264 kb on + strandat 1037.264 kb on + strandat 1037.276 kb on + strandat 1037.383 kb on - strand, within HP15_1021at 1037.554 kb on + strand, within HP15_1021at 1037.603 kb on - strand, within HP15_1021at 1037.748 kb on - strand, within HP15_1021at 1037.834 kb on + strand, within HP15_1021at 1037.911 kb on + strandat 1037.980 kb on + strandat 1037.988 kb on - strandat 1037.988 kb on - strandat 1038.016 kb on + strandat 1038.135 kb on - strandat 1038.194 kb on + strand, within HP15_1022at 1038.207 kb on + strand, within HP15_1022at 1038.383 kb on - strand, within HP15_1022at 1038.426 kb on + strand, within HP15_1022at 1038.540 kb on - strand, within HP15_1022at 1038.540 kb on - strand, within HP15_1022at 1038.572 kb on + strand, within HP15_1022at 1038.796 kb on - strand, within HP15_1022at 1038.807 kb on + strand, within HP15_1022at 1038.915 kb on - strand, within HP15_1022at 1038.993 kb on + strand, within HP15_1022at 1039.078 kb on + strand, within HP15_1022at 1039.125 kb on + strand, within HP15_1022at 1039.125 kb on + strand, within HP15_1022at 1039.125 kb on + strand, within HP15_1022at 1039.133 kb on - strand, within HP15_1022at 1039.133 kb on - strand, within HP15_1022at 1039.135 kb on + strand, within HP15_1022at 1039.135 kb on + strand, within HP15_1022at 1039.135 kb on + strand, within HP15_1022at 1039.135 kb on + strand, within HP15_1022at 1039.258 kb on + strand, within HP15_1022at 1039.263 kb on + strand, within HP15_1022at 1039.263 kb on + strand, within HP15_1022at 1039.271 kb on - strand, within HP15_1022at 1039.286 kb on - strand, within HP15_1022at 1039.297 kb on - strand, within HP15_1022at 1039.405 kb on - strand, within HP15_1022at 1039.544 kb on - strand, within HP15_1022at 1039.556 kb on + strand, within HP15_1022at 1039.586 kb on + strand, within HP15_1022at 1039.859 kb on - strandat 1039.951 kb on - strandat 1040.045 kb on + strandat 1040.077 kb on - strandat 1040.089 kb on - strand, within HP15_1023at 1040.122 kb on + strand, within HP15_1023at 1040.125 kb on - strand, within HP15_1023at 1040.242 kb on + strand, within HP15_1023at 1040.246 kb on + strand, within HP15_1023at 1040.351 kb on + strand, within HP15_1023at 1040.471 kb on + strand, within HP15_1023at 1040.471 kb on + strand, within HP15_1023at 1040.479 kb on - strand, within HP15_1023at 1040.479 kb on - strand, within HP15_1023at 1040.479 kb on - strand, within HP15_1023at 1040.481 kb on + strand, within HP15_1023at 1040.484 kb on - strand, within HP15_1023at 1040.484 kb on - strand, within HP15_1023at 1040.489 kb on - strand, within HP15_1023at 1040.501 kb on + strand, within HP15_1023at 1040.501 kb on + strand, within HP15_1023at 1040.566 kb on + strand, within HP15_1023at 1040.574 kb on - strand, within HP15_1023at 1040.625 kb on - strand, within HP15_1023at 1040.731 kb on + strand, within HP15_1023at 1040.731 kb on + strand, within HP15_1023at 1040.739 kb on - strand, within HP15_1023

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. pH10
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1,037,214 - -0.3
1,037,224 - +0.4
1,037,264 + -1.0
1,037,264 + +0.5
1,037,264 + +0.5
1,037,276 + -0.3
1,037,383 - HP15_1021 0.21 -0.5
1,037,554 + HP15_1021 0.44 +0.4
1,037,603 - HP15_1021 0.51 +0.4
1,037,748 - HP15_1021 0.70 -0.1
1,037,834 + HP15_1021 0.82 +0.8
1,037,911 + -1.1
1,037,980 + -0.1
1,037,988 - -0.5
1,037,988 - -0.6
1,038,016 + -0.7
1,038,135 - +1.0
1,038,194 + HP15_1022 0.13 -0.3
1,038,207 + HP15_1022 0.14 +0.2
1,038,383 - HP15_1022 0.23 -0.9
1,038,426 + HP15_1022 0.25 -0.4
1,038,540 - HP15_1022 0.32 +0.1
1,038,540 - HP15_1022 0.32 -0.1
1,038,572 + HP15_1022 0.33 +0.2
1,038,796 - HP15_1022 0.45 -0.6
1,038,807 + HP15_1022 0.46 +0.4
1,038,915 - HP15_1022 0.52 +3.2
1,038,993 + HP15_1022 0.56 +1.8
1,039,078 + HP15_1022 0.61 -0.1
1,039,125 + HP15_1022 0.63 +1.5
1,039,125 + HP15_1022 0.63 +0.7
1,039,125 + HP15_1022 0.63 +1.3
1,039,133 - HP15_1022 0.63 +0.8
1,039,133 - HP15_1022 0.63 -0.7
1,039,135 + HP15_1022 0.64 +1.6
1,039,135 + HP15_1022 0.64 +0.7
1,039,135 + HP15_1022 0.64 +1.9
1,039,135 + HP15_1022 0.64 -0.7
1,039,258 + HP15_1022 0.70 +0.6
1,039,263 + HP15_1022 0.70 -0.2
1,039,263 + HP15_1022 0.70 -0.3
1,039,271 - HP15_1022 0.71 +0.1
1,039,286 - HP15_1022 0.72 +0.2
1,039,297 - HP15_1022 0.72 -0.8
1,039,405 - HP15_1022 0.78 +0.1
1,039,544 - HP15_1022 0.86 -2.7
1,039,556 + HP15_1022 0.86 -0.2
1,039,586 + HP15_1022 0.88 +1.5
1,039,859 - -2.2
1,039,951 - +0.2
1,040,045 + +0.3
1,040,077 - -0.5
1,040,089 - HP15_1023 0.10 -0.7
1,040,122 + HP15_1023 0.12 +0.2
1,040,125 - HP15_1023 0.13 +0.6
1,040,242 + HP15_1023 0.20 -0.0
1,040,246 + HP15_1023 0.21 +0.1
1,040,351 + HP15_1023 0.28 -0.6
1,040,471 + HP15_1023 0.36 -0.5
1,040,471 + HP15_1023 0.36 +1.4
1,040,479 - HP15_1023 0.36 -1.1
1,040,479 - HP15_1023 0.36 -0.9
1,040,479 - HP15_1023 0.36 +0.5
1,040,481 + HP15_1023 0.36 +0.8
1,040,484 - HP15_1023 0.37 -0.0
1,040,484 - HP15_1023 0.37 -0.3
1,040,489 - HP15_1023 0.37 +0.3
1,040,501 + HP15_1023 0.38 +0.4
1,040,501 + HP15_1023 0.38 -2.5
1,040,566 + HP15_1023 0.42 +0.8
1,040,574 - HP15_1023 0.43 -0.5
1,040,625 - HP15_1023 0.46 +1.0
1,040,731 + HP15_1023 0.53 +1.5
1,040,731 + HP15_1023 0.53 +0.5
1,040,739 - HP15_1023 0.54 -0.3

Or see this region's nucleotide sequence