Experiment: m.b. pH10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1020 and HP15_1021 are separated by 154 nucleotides HP15_1021 and HP15_1022 overlap by 16 nucleotides HP15_1022 and HP15_1023 are separated by 125 nucleotides
HP15_1020: HP15_1020 - methyl-accepting chemotaxis sensory transducer, at 1,035,446 to 1,037,071
_1020
HP15_1021: HP15_1021 - tRNA pseudouridine synthase C, at 1,037,226 to 1,037,969
_1021
HP15_1022: HP15_1022 - sensory box protein/GGDEF domain protein, at 1,037,954 to 1,039,810
_1022
HP15_1023: HP15_1023 - 6-aminohexanoate-cyclic-dimer hydrolase, at 1,039,936 to 1,041,432
_1023
Position (kb)
1037
1038
1039
1040 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1037.214 kb on - strand at 1037.224 kb on - strand at 1037.264 kb on + strand at 1037.264 kb on + strand at 1037.264 kb on + strand at 1037.276 kb on + strand at 1037.383 kb on - strand, within HP15_1021 at 1037.554 kb on + strand, within HP15_1021 at 1037.603 kb on - strand, within HP15_1021 at 1037.748 kb on - strand, within HP15_1021 at 1037.834 kb on + strand, within HP15_1021 at 1037.911 kb on + strand at 1037.980 kb on + strand at 1037.988 kb on - strand at 1037.988 kb on - strand at 1038.016 kb on + strand at 1038.135 kb on - strand at 1038.194 kb on + strand, within HP15_1022 at 1038.207 kb on + strand, within HP15_1022 at 1038.383 kb on - strand, within HP15_1022 at 1038.426 kb on + strand, within HP15_1022 at 1038.540 kb on - strand, within HP15_1022 at 1038.540 kb on - strand, within HP15_1022 at 1038.572 kb on + strand, within HP15_1022 at 1038.796 kb on - strand, within HP15_1022 at 1038.807 kb on + strand, within HP15_1022 at 1038.915 kb on - strand, within HP15_1022 at 1038.993 kb on + strand, within HP15_1022 at 1039.078 kb on + strand, within HP15_1022 at 1039.125 kb on + strand, within HP15_1022 at 1039.125 kb on + strand, within HP15_1022 at 1039.125 kb on + strand, within HP15_1022 at 1039.133 kb on - strand, within HP15_1022 at 1039.133 kb on - strand, within HP15_1022 at 1039.135 kb on + strand, within HP15_1022 at 1039.135 kb on + strand, within HP15_1022 at 1039.135 kb on + strand, within HP15_1022 at 1039.135 kb on + strand, within HP15_1022 at 1039.258 kb on + strand, within HP15_1022 at 1039.263 kb on + strand, within HP15_1022 at 1039.263 kb on + strand, within HP15_1022 at 1039.271 kb on - strand, within HP15_1022 at 1039.286 kb on - strand, within HP15_1022 at 1039.297 kb on - strand, within HP15_1022 at 1039.405 kb on - strand, within HP15_1022 at 1039.544 kb on - strand, within HP15_1022 at 1039.556 kb on + strand, within HP15_1022 at 1039.586 kb on + strand, within HP15_1022 at 1039.859 kb on - strand at 1039.951 kb on - strand at 1040.045 kb on + strand at 1040.077 kb on - strand at 1040.089 kb on - strand, within HP15_1023 at 1040.122 kb on + strand, within HP15_1023 at 1040.125 kb on - strand, within HP15_1023 at 1040.242 kb on + strand, within HP15_1023 at 1040.246 kb on + strand, within HP15_1023 at 1040.351 kb on + strand, within HP15_1023 at 1040.471 kb on + strand, within HP15_1023 at 1040.471 kb on + strand, within HP15_1023 at 1040.479 kb on - strand, within HP15_1023 at 1040.479 kb on - strand, within HP15_1023 at 1040.479 kb on - strand, within HP15_1023 at 1040.481 kb on + strand, within HP15_1023 at 1040.484 kb on - strand, within HP15_1023 at 1040.484 kb on - strand, within HP15_1023 at 1040.489 kb on - strand, within HP15_1023 at 1040.501 kb on + strand, within HP15_1023 at 1040.501 kb on + strand, within HP15_1023 at 1040.566 kb on + strand, within HP15_1023 at 1040.574 kb on - strand, within HP15_1023 at 1040.625 kb on - strand, within HP15_1023 at 1040.731 kb on + strand, within HP15_1023 at 1040.731 kb on + strand, within HP15_1023 at 1040.739 kb on - strand, within HP15_1023
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. pH10 remove 1,037,214 - -0.3 1,037,224 - +0.4 1,037,264 + -1.0 1,037,264 + +0.5 1,037,264 + +0.5 1,037,276 + -0.3 1,037,383 - HP15_1021 0.21 -0.5 1,037,554 + HP15_1021 0.44 +0.4 1,037,603 - HP15_1021 0.51 +0.4 1,037,748 - HP15_1021 0.70 -0.1 1,037,834 + HP15_1021 0.82 +0.8 1,037,911 + -1.1 1,037,980 + -0.1 1,037,988 - -0.5 1,037,988 - -0.6 1,038,016 + -0.7 1,038,135 - +1.0 1,038,194 + HP15_1022 0.13 -0.3 1,038,207 + HP15_1022 0.14 +0.2 1,038,383 - HP15_1022 0.23 -0.9 1,038,426 + HP15_1022 0.25 -0.4 1,038,540 - HP15_1022 0.32 +0.1 1,038,540 - HP15_1022 0.32 -0.1 1,038,572 + HP15_1022 0.33 +0.2 1,038,796 - HP15_1022 0.45 -0.6 1,038,807 + HP15_1022 0.46 +0.4 1,038,915 - HP15_1022 0.52 +3.2 1,038,993 + HP15_1022 0.56 +1.8 1,039,078 + HP15_1022 0.61 -0.1 1,039,125 + HP15_1022 0.63 +1.5 1,039,125 + HP15_1022 0.63 +0.7 1,039,125 + HP15_1022 0.63 +1.3 1,039,133 - HP15_1022 0.63 +0.8 1,039,133 - HP15_1022 0.63 -0.7 1,039,135 + HP15_1022 0.64 +1.6 1,039,135 + HP15_1022 0.64 +0.7 1,039,135 + HP15_1022 0.64 +1.9 1,039,135 + HP15_1022 0.64 -0.7 1,039,258 + HP15_1022 0.70 +0.6 1,039,263 + HP15_1022 0.70 -0.2 1,039,263 + HP15_1022 0.70 -0.3 1,039,271 - HP15_1022 0.71 +0.1 1,039,286 - HP15_1022 0.72 +0.2 1,039,297 - HP15_1022 0.72 -0.8 1,039,405 - HP15_1022 0.78 +0.1 1,039,544 - HP15_1022 0.86 -2.7 1,039,556 + HP15_1022 0.86 -0.2 1,039,586 + HP15_1022 0.88 +1.5 1,039,859 - -2.2 1,039,951 - +0.2 1,040,045 + +0.3 1,040,077 - -0.5 1,040,089 - HP15_1023 0.10 -0.7 1,040,122 + HP15_1023 0.12 +0.2 1,040,125 - HP15_1023 0.13 +0.6 1,040,242 + HP15_1023 0.20 -0.0 1,040,246 + HP15_1023 0.21 +0.1 1,040,351 + HP15_1023 0.28 -0.6 1,040,471 + HP15_1023 0.36 -0.5 1,040,471 + HP15_1023 0.36 +1.4 1,040,479 - HP15_1023 0.36 -1.1 1,040,479 - HP15_1023 0.36 -0.9 1,040,479 - HP15_1023 0.36 +0.5 1,040,481 + HP15_1023 0.36 +0.8 1,040,484 - HP15_1023 0.37 -0.0 1,040,484 - HP15_1023 0.37 -0.3 1,040,489 - HP15_1023 0.37 +0.3 1,040,501 + HP15_1023 0.38 +0.4 1,040,501 + HP15_1023 0.38 -2.5 1,040,566 + HP15_1023 0.42 +0.8 1,040,574 - HP15_1023 0.43 -0.5 1,040,625 - HP15_1023 0.46 +1.0 1,040,731 + HP15_1023 0.53 +1.5 1,040,731 + HP15_1023 0.53 +0.5 1,040,739 - HP15_1023 0.54 -0.3
Or see this region's nucleotide sequence