Strain Fitness in Shewanella amazonensis SB2B around Sama_3407

Experiment: D-Glucosamine Hydrochloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucosamine Hydrochloride (N)
4,031,249	+				-1.1
4,031,249	+				-0.4
4,031,250	-				-1.0
4,031,250	-				-0.3
4,031,250	-				+1.0
4,031,250	-				-0.3
4,031,256	+				+1.0
4,031,256	+				+0.0
4,031,256	+				-0.8
4,031,256	+				-0.2
4,031,257	-				+0.6
4,031,257	-				-0.2
4,031,261	+				-0.2
4,031,261	+				+0.3
4,031,261	+				+0.1
4,031,261	+				-0.3
4,031,261	+				-0.4
4,031,261	+				-2.2
4,031,261	+				-0.7
4,031,262	-				+1.7
4,031,262	-				+1.0
4,031,270	+				-1.4
4,031,270	+				-1.2
4,031,271	-				-1.3
4,031,271	-				+0.6
4,031,271	-				-1.5
4,031,279	+				-0.3
4,031,279	+				-0.9
4,031,280	-				+1.4
4,031,280	-				+0.8
4,031,280	-				-1.7
4,031,380	+		Sama_3405	0.39	+0.3
4,031,380	+		Sama_3405	0.39	-0.6
4,031,380	+		Sama_3405	0.39	-1.8
4,031,381	-		Sama_3405	0.39	+0.4
4,031,381	-		Sama_3405	0.39	+0.2
4,031,381	-		Sama_3405	0.39	-0.1
4,031,381	-		Sama_3405	0.39	+0.3
4,031,381	-		Sama_3405	0.39	+0.0
4,031,381	-		Sama_3405	0.39	-0.9
4,031,383	+		Sama_3405	0.40	+0.0
4,031,383	+		Sama_3405	0.40	-0.4
4,031,383	+		Sama_3405	0.40	-0.1
4,031,384	-		Sama_3405	0.41	-0.1
4,031,384	-		Sama_3405	0.41	-0.0
4,031,407	+		Sama_3405	0.51	+0.1
4,031,457	+		Sama_3405	0.73	-0.3
4,031,457	+		Sama_3405	0.73	-0.3
4,031,457	+		Sama_3405	0.73	-1.2
4,031,458	-		Sama_3405	0.74	+0.2
4,031,458	-		Sama_3405	0.74	-0.9
4,031,458	-		Sama_3405	0.74	+0.5
4,031,458	-		Sama_3405	0.74	+0.1
4,031,504	-				-0.9
4,031,573	+				+1.6
4,031,573	+				-0.7
4,031,574	-				-0.8
4,031,574	-				-0.7
4,031,574	-				+0.2
4,031,574	-				-0.3
4,031,574	-				-1.6
4,031,599	+		Sama_3406	0.10	-1.3
4,031,599	+		Sama_3406	0.10	-0.7
4,031,600	-		Sama_3406	0.10	-0.3
4,031,600	-		Sama_3406	0.10	+1.9
4,031,600	-		Sama_3406	0.10	+1.3
4,031,600	-		Sama_3406	0.10	-0.1
4,031,600	-		Sama_3406	0.10	-0.7
4,031,602	+		Sama_3406	0.11	+0.4
4,031,603	-		Sama_3406	0.11	-1.4
4,031,603	-		Sama_3406	0.11	-0.3
4,031,603	-		Sama_3406	0.11	+0.6
4,031,626	+		Sama_3406	0.14	-1.2
4,031,764	+		Sama_3406	0.35	+0.2
4,031,764	+		Sama_3406	0.35	-0.6
4,031,764	+		Sama_3406	0.35	-1.6
4,031,764	+		Sama_3406	0.35	-1.5
4,031,765	-		Sama_3406	0.35	+0.0
4,031,785	+		Sama_3406	0.39	+0.9
4,031,816	+		Sama_3406	0.43	-1.2
4,031,816	+		Sama_3406	0.43	-0.3
4,031,816	+		Sama_3406	0.43	-0.6
4,031,816	+		Sama_3406	0.43	+0.2
4,031,816	+		Sama_3406	0.43	-0.6
4,031,816	+		Sama_3406	0.43	-1.0
4,031,817	-		Sama_3406	0.43	+0.9
4,031,846	+		Sama_3406	0.48	+0.6
4,031,846	+		Sama_3406	0.48	+0.6
4,031,950	+		Sama_3406	0.64	-1.0
4,031,951	-		Sama_3406	0.64	+0.3
4,031,951	-		Sama_3406	0.64	+0.2
4,031,951	-		Sama_3406	0.64	+0.0
4,031,951	-		Sama_3406	0.64	-0.7
4,032,002	+		Sama_3406	0.72	-0.7
4,032,084	+		Sama_3406	0.84	+0.2
4,032,084	+		Sama_3406	0.84	+1.4
4,032,085	-		Sama_3406	0.84	-0.4
4,032,085	-		Sama_3406	0.84	-0.8
4,032,105	-		Sama_3406	0.87	+2.1
4,032,105	-		Sama_3406	0.87	+0.1
4,032,105	-		Sama_3406	0.87	-0.0
4,032,105	-		Sama_3406	0.87	-0.3
4,032,151	-				+0.0
4,032,151	-				+0.7
4,032,156	+				-0.2
4,032,184	+				-0.5
4,032,191	-				+2.4
4,032,203	+				-1.1
4,032,203	+				+0.2
4,032,203	+				-0.3
4,032,203	+				+0.6
4,032,203	+				-1.2
4,032,203	+				+1.8
4,032,203	+				-1.6
4,032,203	+				-0.8
4,032,203	+				-1.0
4,032,204	-				-1.6
4,032,204	-				-1.5
4,032,204	-				-0.4
4,032,208	+				+0.4
4,032,208	+				+0.9
4,032,208	+				-0.9
4,032,208	+				-0.5
4,032,209	-				-2.3
4,032,209	-				-0.0
4,032,210	-				-0.4
4,032,287	+				+1.1
4,032,287	+				+0.8
4,032,287	+				+1.6
4,032,287	+				-0.0
4,032,287	+				+0.8
4,032,287	+				+1.4
4,032,288	-				-1.4
4,032,328	+				-1.8
4,032,399	+		Sama_3407	0.17	+0.8
4,032,400	-		Sama_3407	0.17	+0.1
4,032,447	+		Sama_3407	0.22	+2.0
4,032,447	+		Sama_3407	0.22	-0.6
4,032,448	-		Sama_3407	0.22	-0.7
4,032,467	+		Sama_3407	0.24	+2.7
4,032,468	-		Sama_3407	0.25	-1.9
4,032,468	-		Sama_3407	0.25	-0.4
4,032,468	-		Sama_3407	0.25	+0.6
4,032,472	+		Sama_3407	0.25	-0.4
4,032,472	+		Sama_3407	0.25	-0.1
4,032,472	+		Sama_3407	0.25	+0.3
4,032,473	-		Sama_3407	0.25	+0.4
4,032,473	-		Sama_3407	0.25	-0.1
4,032,473	-		Sama_3407	0.25	-0.3
4,032,473	-		Sama_3407	0.25	-1.4
4,032,495	+		Sama_3407	0.28	-0.4
4,032,495	+		Sama_3407	0.28	-0.5
4,032,496	-		Sama_3407	0.28	-0.5
4,032,496	-		Sama_3407	0.28	+1.7
4,032,496	-		Sama_3407	0.28	-0.3
4,032,496	-		Sama_3407	0.28	+1.7
4,032,496	-		Sama_3407	0.28	+0.8
4,032,550	+		Sama_3407	0.34	-0.6
4,032,550	+		Sama_3407	0.34	-1.3
4,032,574	-		Sama_3407	0.36	-0.5
4,032,574	-		Sama_3407	0.36	-0.3
4,032,574	-		Sama_3407	0.36	+0.1
4,032,603	+		Sama_3407	0.40	+1.3
4,032,603	+		Sama_3407	0.40	-1.0
4,032,622	+		Sama_3407	0.42	+0.5
4,032,622	+		Sama_3407	0.42	-0.3
4,032,630	+		Sama_3407	0.43	-1.5
4,032,630	+		Sama_3407	0.43	+1.4
4,032,630	+		Sama_3407	0.43	-0.3
4,032,630	+		Sama_3407	0.43	-2.9
4,032,630	+		Sama_3407	0.43	-1.6
4,032,630	+		Sama_3407	0.43	-0.3
4,032,630	+		Sama_3407	0.43	+0.4
4,032,630	+		Sama_3407	0.43	-1.1
4,032,630	+		Sama_3407	0.43	+0.3
4,032,630	+		Sama_3407	0.43	+0.0
4,032,630	+		Sama_3407	0.43	+0.0
4,032,630	+		Sama_3407	0.43	-0.5
4,032,630	+		Sama_3407	0.43	+0.3
4,032,631	-		Sama_3407	0.43	+0.3
4,032,631	-		Sama_3407	0.43	-1.4
4,032,631	-		Sama_3407	0.43	-1.6
4,032,631	-		Sama_3407	0.43	-0.1
4,032,631	-		Sama_3407	0.43	-0.1
4,032,631	-		Sama_3407	0.43	+0.1
4,032,631	-		Sama_3407	0.43	+0.4
4,032,631	-		Sama_3407	0.43	-0.8
4,032,631	-		Sama_3407	0.43	-1.8
4,032,647	+		Sama_3407	0.45	+2.3
4,032,647	+		Sama_3407	0.45	-0.8
4,032,647	+		Sama_3407	0.45	-1.5
4,032,647	+		Sama_3407	0.45	-1.1
4,032,647	+		Sama_3407	0.45	+0.7
4,032,647	+		Sama_3407	0.45	+0.1
4,032,648	-		Sama_3407	0.45	-2.0
4,032,648	-		Sama_3407	0.45	+0.1
4,032,648	-		Sama_3407	0.45	+0.2
4,032,648	-		Sama_3407	0.45	-2.1
4,032,691	+		Sama_3407	0.50	+0.2
4,032,692	-		Sama_3407	0.50	+1.0
4,032,692	-		Sama_3407	0.50	+1.1
4,032,804	+		Sama_3407	0.62	-0.1
4,032,817	+		Sama_3407	0.64	-1.1
4,032,817	+		Sama_3407	0.64	+1.0
4,032,817	+		Sama_3407	0.64	-0.3
4,032,818	-		Sama_3407	0.64	-0.8
4,032,818	-		Sama_3407	0.64	+0.3
4,032,818	-		Sama_3407	0.64	+0.4
4,032,831	-		Sama_3407	0.65	-1.5
4,032,886	+		Sama_3407	0.71	+1.0
4,032,886	+		Sama_3407	0.71	+0.2
4,032,886	+		Sama_3407	0.71	-0.7
4,032,887	-		Sama_3407	0.71	-1.6
4,032,896	-		Sama_3407	0.72	-1.2
4,032,896	-		Sama_3407	0.72	+0.9
4,032,896	-		Sama_3407	0.72	-0.6
4,032,928	+		Sama_3407	0.76	+0.9
4,032,928	+		Sama_3407	0.76	-0.6
4,032,928	+		Sama_3407	0.76	-0.8
4,032,928	+		Sama_3407	0.76	-0.1
4,032,928	+		Sama_3407	0.76	-0.3
4,032,928	+		Sama_3407	0.76	+0.7
4,032,928	+		Sama_3407	0.76	-0.3
4,032,928	+		Sama_3407	0.76	+0.7
4,032,928	+		Sama_3407	0.76	+0.7
4,032,928	+		Sama_3407	0.76	-0.7
4,032,928	+		Sama_3407	0.76	-0.3
4,032,928	+		Sama_3407	0.76	+1.7
4,032,928	+		Sama_3407	0.76	-0.8
4,032,928	+		Sama_3407	0.76	-1.2
4,032,928	+		Sama_3407	0.76	+1.7
4,032,929	-		Sama_3407	0.76	-0.8
4,032,929	-		Sama_3407	0.76	+0.9
4,032,929	-		Sama_3407	0.76	+0.9
4,032,929	-		Sama_3407	0.76	-1.0
4,032,929	-		Sama_3407	0.76	+0.0
4,032,929	-		Sama_3407	0.76	-0.3
4,032,929	-		Sama_3407	0.76	+0.3
4,032,929	-		Sama_3407	0.76	+1.4
4,032,929	-		Sama_3407	0.76	-2.1
4,032,929	-		Sama_3407	0.76	+0.2
4,032,929	-		Sama_3407	0.76	-0.3
4,032,929	-		Sama_3407	0.76	-0.7
4,032,929	-		Sama_3407	0.76	+1.2
4,032,929	-		Sama_3407	0.76	+0.1
4,032,932	+		Sama_3407	0.77	+1.2
4,032,932	+		Sama_3407	0.77	-2.8
4,032,932	+		Sama_3407	0.77	+0.2
4,032,932	+		Sama_3407	0.77	+0.9
4,032,932	+		Sama_3407	0.77	-0.3
4,032,932	+		Sama_3407	0.77	-1.4
4,032,932	+		Sama_3407	0.77	-1.8
4,032,932	+		Sama_3407	0.77	+1.0
4,032,932	+		Sama_3407	0.77	-1.0
4,032,932	+		Sama_3407	0.77	-0.2
4,032,932	+		Sama_3407	0.77	-1.3
4,032,932	+		Sama_3407	0.77	-0.8
4,032,932	+		Sama_3407	0.77	+1.0
4,032,932	+		Sama_3407	0.77	+0.9
4,032,932	+		Sama_3407	0.77	-0.8
4,032,932	+		Sama_3407	0.77	+0.0
4,032,932	+		Sama_3407	0.77	-1.6
4,032,933	-		Sama_3407	0.77	+0.7
4,032,933	-		Sama_3407	0.77	-2.8
4,032,933	-		Sama_3407	0.77	-0.2
4,032,933	-		Sama_3407	0.77	-0.0
4,032,933	-		Sama_3407	0.77	+1.7
4,032,933	-		Sama_3407	0.77	+1.0
4,032,933	-		Sama_3407	0.77	+0.3
4,032,933	-		Sama_3407	0.77	+0.8
4,032,933	-		Sama_3407	0.77	-1.0
4,032,933	-		Sama_3407	0.77	+1.2
4,032,933	-		Sama_3407	0.77	-0.7
4,032,933	-		Sama_3407	0.77	-0.9
4,032,933	-		Sama_3407	0.77	+0.3
4,032,933	-		Sama_3407	0.77	-0.8
4,032,933	-		Sama_3407	0.77	-0.5
4,032,933	-		Sama_3407	0.77	-1.0
4,032,933	-		Sama_3407	0.77	+0.7
4,032,933	-		Sama_3407	0.77	+0.2
4,032,933	-		Sama_3407	0.77	+0.3
4,032,963	+		Sama_3407	0.80	+1.3
4,032,963	+		Sama_3407	0.80	+0.3
4,032,964	-		Sama_3407	0.80	+0.0
4,032,964	-		Sama_3407	0.80	+0.1
4,032,964	-		Sama_3407	0.80	-1.3
4,032,998	+		Sama_3407	0.84	+1.0
4,032,998	+		Sama_3407	0.84	+0.9
4,032,999	-		Sama_3407	0.84	-0.2
4,032,999	-		Sama_3407	0.84	+0.4
4,032,999	-		Sama_3407	0.84	-2.1
4,032,999	-		Sama_3407	0.84	-1.7
4,032,999	-		Sama_3407	0.84	-0.6
4,033,012	-		Sama_3407	0.85	+1.0
4,033,012	-		Sama_3407	0.85	-1.6
4,033,012	-		Sama_3407	0.85	+0.8
4,033,053	+				-0.9
4,033,053	+				-0.1
4,033,053	+				-0.4
4,033,053	+				-1.2
4,033,053	+				+0.5
4,033,053	+				-0.3
4,033,053	+				-0.2
4,033,054	-				-0.5
4,033,054	-				+2.2
4,033,054	-				-0.9
4,033,054	-				+0.7
4,033,054	-				-1.0
4,033,054	-				+1.5
4,033,054	-				+0.1
4,033,054	-				-0.5
4,033,054	-				-2.1
4,033,054	-				+1.4
4,033,081	+				-0.6
4,033,172	+				-2.0
4,033,172	+				+0.7
4,033,172	+				+0.5
4,033,172	+				-1.2
4,033,173	-				-1.0
4,033,173	-				+1.3
4,033,173	-				+0.7
4,033,209	+				+0.1
4,033,210	-				-1.4
4,033,245	+				-0.6
4,033,245	+				+0.2
4,033,245	+				-1.3
4,033,246	-				+2.7
4,033,246	-				+0.2
4,033,246	-				+0.1
4,033,246	-				+0.3
4,033,249	+				-0.4
4,033,251	+				-1.5
4,033,251	+				+0.6
4,033,251	+				-0.3
4,033,251	+				+1.2
4,033,252	-				+0.2
4,033,252	-				-0.3
4,033,257	+				-0.0
4,033,258	-				+1.1
4,033,321	+		Sama_3408	0.14	-0.7
4,033,321	+		Sama_3408	0.14	+0.7
4,033,321	+		Sama_3408	0.14	-0.4
4,033,321	+		Sama_3408	0.14	-0.1
4,033,321	+		Sama_3408	0.14	+1.2
4,033,321	+		Sama_3408	0.14	+0.9
4,033,322	-		Sama_3408	0.14	-0.4
4,033,322	-		Sama_3408	0.14	+1.2
4,033,322	-		Sama_3408	0.14	+0.3
4,033,322	-		Sama_3408	0.14	+0.8
4,033,322	-		Sama_3408	0.14	+0.5
4,033,322	-		Sama_3408	0.14	-0.6
4,033,322	-		Sama_3408	0.14	-0.3
4,033,322	-		Sama_3408	0.14	-0.3
4,033,333	-		Sama_3408	0.14	-0.6
4,033,349	-		Sama_3408	0.16	-1.4
4,033,349	-		Sama_3408	0.16	+1.2
4,033,476	+		Sama_3408	0.25	-0.4
4,033,476	+		Sama_3408	0.25	+0.1
4,033,477	-		Sama_3408	0.25	-0.5
4,033,477	-		Sama_3408	0.25	-0.3
4,033,477	-		Sama_3408	0.25	+0.7
4,033,477	-		Sama_3408	0.25	+0.7
4,033,497	-		Sama_3408	0.27	+0.0
4,033,512	+		Sama_3408	0.28	-0.2
4,033,513	-		Sama_3408	0.28	-1.3
4,033,513	-		Sama_3408	0.28	-1.0
4,033,513	-		Sama_3408	0.28	-1.4
4,033,515	+		Sama_3408	0.28	+0.6
4,033,515	+		Sama_3408	0.28	-0.3
4,033,522	-		Sama_3408	0.28	+0.2
4,033,533	+		Sama_3408	0.29	-1.0
4,033,533	+		Sama_3408	0.29	+1.4
4,033,533	+		Sama_3408	0.29	-2.4
4,033,533	+		Sama_3408	0.29	+1.7
4,033,533	+		Sama_3408	0.29	+0.1
4,033,533	+		Sama_3408	0.29	+1.7
4,033,534	-		Sama_3408	0.29	-1.2
4,033,534	-		Sama_3408	0.29	+0.2
4,033,545	+		Sama_3408	0.30	+0.7
4,033,545	+		Sama_3408	0.30	+1.0
4,033,546	-		Sama_3408	0.30	+0.1
4,033,546	-		Sama_3408	0.30	+0.2
4,033,551	+		Sama_3408	0.31	+0.1
4,033,552	-		Sama_3408	0.31	-0.5
4,033,552	-		Sama_3408	0.31	-0.4
4,033,552	-		Sama_3408	0.31	-0.2
4,033,566	+		Sama_3408	0.32	-0.1
4,033,566	+		Sama_3408	0.32	+1.2
4,033,566	+		Sama_3408	0.32	-1.2
4,033,567	-		Sama_3408	0.32	-1.0
4,033,567	-		Sama_3408	0.32	-0.2
4,033,627	-		Sama_3408	0.36	-0.3
4,033,627	-		Sama_3408	0.36	-0.3
4,033,627	-		Sama_3408	0.36	-0.6
4,033,632	-		Sama_3408	0.37	-0.1
4,033,632	-		Sama_3408	0.37	-0.6
4,033,665	+		Sama_3408	0.39	-0.6
4,033,665	+		Sama_3408	0.39	-0.6
4,033,665	+		Sama_3408	0.39	+0.6
4,033,666	-		Sama_3408	0.39	-0.1
4,033,666	-		Sama_3408	0.39	-0.3
4,033,676	-		Sama_3408	0.40	+2.6
4,033,682	+		Sama_3408	0.40	+1.1
4,033,682	+		Sama_3408	0.40	+0.2
4,033,683	-		Sama_3408	0.40	-0.3
4,033,723	+		Sama_3408	0.43	+0.0
4,033,723	+		Sama_3408	0.43	+2.5
4,033,723	+		Sama_3408	0.43	-0.1
4,033,723	+		Sama_3408	0.43	+1.0
4,033,723	+		Sama_3408	0.43	-0.1
4,033,724	-		Sama_3408	0.43	+2.7
4,033,724	-		Sama_3408	0.43	-0.7
4,033,724	-		Sama_3408	0.43	-0.7
4,033,768	+		Sama_3408	0.47	-1.8
4,033,768	+		Sama_3408	0.47	-0.7
4,033,768	+		Sama_3408	0.47	+0.2
4,033,768	+		Sama_3408	0.47	+1.7
4,033,774	+		Sama_3408	0.47	-0.3
4,033,774	+		Sama_3408	0.47	+0.2
4,033,775	-		Sama_3408	0.47	-1.0
4,033,775	-		Sama_3408	0.47	-0.5
4,033,826	-		Sama_3408	0.51	+0.0
4,033,826	-		Sama_3408	0.51	-1.5
4,033,847	+		Sama_3408	0.53	+0.9
4,033,902	+		Sama_3408	0.57	-0.8
4,033,903	-		Sama_3408	0.57	+1.7
4,033,927	+		Sama_3408	0.58	-0.5
4,033,927	+		Sama_3408	0.58	+1.4
4,033,927	+		Sama_3408	0.58	+1.0
4,033,927	+		Sama_3408	0.58	-2.7
4,033,927	+		Sama_3408	0.58	+0.3
4,033,927	+		Sama_3408	0.58	-0.4
4,033,927	+		Sama_3408	0.58	+0.4
4,033,927	+		Sama_3408	0.58	-0.7
4,033,927	+		Sama_3408	0.58	-0.2
4,033,927	+		Sama_3408	0.58	-0.3
4,033,927	+		Sama_3408	0.58	+0.7
4,033,927	+		Sama_3408	0.58	-2.1
4,033,927	+		Sama_3408	0.58	-0.8
4,033,927	+		Sama_3408	0.58	-0.6
4,033,928	-		Sama_3408	0.59	-0.4
4,033,928	-		Sama_3408	0.59	-0.9
4,033,928	-		Sama_3408	0.59	-0.7
4,033,928	-		Sama_3408	0.59	-0.0
4,033,928	-		Sama_3408	0.59	-0.8
4,033,928	-		Sama_3408	0.59	+1.7
4,033,928	-		Sama_3408	0.59	-0.8
4,033,928	-		Sama_3408	0.59	+0.2
4,033,928	-		Sama_3408	0.59	-0.1
4,033,928	-		Sama_3408	0.59	+0.2
4,033,928	-		Sama_3408	0.59	-0.4
4,033,928	-		Sama_3408	0.59	-1.3
4,033,928	-		Sama_3408	0.59	+2.2
4,033,928	-		Sama_3408	0.59	-1.5
4,033,928	-		Sama_3408	0.59	-0.6
4,033,933	+		Sama_3408	0.59	-0.2
4,033,933	+		Sama_3408	0.59	-0.3
4,033,933	+		Sama_3408	0.59	-0.6
4,033,933	+		Sama_3408	0.59	-1.4
4,033,933	+		Sama_3408	0.59	-1.1
4,033,933	+		Sama_3408	0.59	-1.3
4,033,934	-		Sama_3408	0.59	-0.3
4,033,934	-		Sama_3408	0.59	-1.7
4,033,952	+		Sama_3408	0.60	-1.1
4,033,959	+		Sama_3408	0.61	+1.7
4,033,959	+		Sama_3408	0.61	+0.2
4,034,141	+		Sama_3408	0.74	+1.0