Strain Fitness in Shewanella amazonensis SB2B around Sama_2652

Experiment: D-Glucosamine Hydrochloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucosamine Hydrochloride (N)
3,176,978	+		Sama_2650	0.72	+0.1
3,176,978	+		Sama_2650	0.72	-1.3
3,176,979	-		Sama_2650	0.73	-1.0
3,177,029	+		Sama_2650	0.76	-0.3
3,177,029	+		Sama_2650	0.76	+1.7
3,177,029	+		Sama_2650	0.76	+0.4
3,177,029	+		Sama_2650	0.76	+0.8
3,177,030	-		Sama_2650	0.76	-1.5
3,177,030	-		Sama_2650	0.76	+0.3
3,177,030	-		Sama_2650	0.76	+0.1
3,177,031	+		Sama_2650	0.76	+0.8
3,177,031	+		Sama_2650	0.76	-2.2
3,177,063	+		Sama_2650	0.78	-0.8
3,177,063	+		Sama_2650	0.78	+0.8
3,177,064	-		Sama_2650	0.78	+0.2
3,177,064	-		Sama_2650	0.78	+0.0
3,177,080	+		Sama_2650	0.79	-0.2
3,177,100	+		Sama_2650	0.81	-0.7
3,177,100	+		Sama_2650	0.81	-0.4
3,177,100	+		Sama_2650	0.81	-1.4
3,177,101	-		Sama_2650	0.81	-0.5
3,177,180	+		Sama_2650	0.86	+0.1
3,177,180	+		Sama_2650	0.86	-0.5
3,177,180	+		Sama_2650	0.86	+0.9
3,177,180	+		Sama_2650	0.86	-1.3
3,177,180	+		Sama_2650	0.86	+0.5
3,177,181	-		Sama_2650	0.86	-0.1
3,177,181	-		Sama_2650	0.86	+0.4
3,177,211	+		Sama_2650	0.88	+0.2
3,177,212	-		Sama_2650	0.88	-0.4
3,177,212	-		Sama_2650	0.88	-0.2
3,177,305	+				-0.1
3,177,323	-				+0.1
3,177,323	-				+0.7
3,177,369	+				+0.4
3,177,370	-				-0.3
3,177,370	-				-0.8
3,177,386	+				+0.9
3,177,423	+				+0.1
3,177,424	-				+0.8
3,177,448	+				+0.3
3,177,448	+				+1.0
3,177,448	+				+1.7
3,177,450	+				+0.8
3,177,450	+				+1.6
3,177,451	-				-1.2
3,177,451	-				-1.6
3,177,488	+		Sama_2651	0.16	-0.5
3,177,514	+		Sama_2651	0.23	+0.5
3,177,514	+		Sama_2651	0.23	+1.5
3,177,514	+		Sama_2651	0.23	+0.1
3,177,549	-		Sama_2651	0.33	+0.2
3,177,549	-		Sama_2651	0.33	-1.4
3,177,617	+		Sama_2651	0.52	+1.4
3,177,618	-		Sama_2651	0.52	+0.5
3,177,619	+		Sama_2651	0.52	+0.6
3,177,662	-		Sama_2651	0.64	-1.4
3,177,662	-		Sama_2651	0.64	-0.3
3,177,662	-		Sama_2651	0.64	+0.0
3,177,662	-		Sama_2651	0.64	-1.4
3,177,770	+				+0.8
3,177,770	+				-0.5
3,177,771	-				-0.3
3,177,771	-				+0.4
3,177,771	-				+1.0
3,177,791	+				-0.6
3,177,791	+				-0.9
3,177,798	+				-1.2
3,177,798	+				+1.4
3,177,798	+				+0.9
3,177,841	+				+1.0
3,177,842	-				-0.9
3,177,885	-				+0.6
3,177,911	+				-1.0
3,177,935	-				+1.1
3,178,085	+		Sama_2652	0.25	-0.7
3,178,085	+		Sama_2652	0.25	-0.4
3,178,085	+		Sama_2652	0.25	-1.3
3,178,086	-		Sama_2652	0.25	-1.3
3,178,131	+		Sama_2652	0.31	-0.9
3,178,131	+		Sama_2652	0.31	-0.2
3,178,131	+		Sama_2652	0.31	-0.3
3,178,132	-		Sama_2652	0.32	-0.6
3,178,160	-		Sama_2652	0.35	+0.8
3,178,175	+		Sama_2652	0.37	-0.8
3,178,175	+		Sama_2652	0.37	-0.1
3,178,175	+		Sama_2652	0.37	+0.1
3,178,175	+		Sama_2652	0.37	-0.3
3,178,175	+		Sama_2652	0.37	-0.4
3,178,175	+		Sama_2652	0.37	+0.0
3,178,175	+		Sama_2652	0.37	+0.6
3,178,175	+		Sama_2652	0.37	-1.7
3,178,175	+		Sama_2652	0.37	-2.0
3,178,175	+		Sama_2652	0.37	-1.4
3,178,176	-		Sama_2652	0.38	-0.6
3,178,176	-		Sama_2652	0.38	-1.1
3,178,176	-		Sama_2652	0.38	-0.7
3,178,176	-		Sama_2652	0.38	-0.5
3,178,176	-		Sama_2652	0.38	-0.7
3,178,176	-		Sama_2652	0.38	+0.5
3,178,176	-		Sama_2652	0.38	+0.2
3,178,184	+		Sama_2652	0.39	-1.1
3,178,185	-		Sama_2652	0.39	-0.3
3,178,187	+		Sama_2652	0.39	+0.7
3,178,187	+		Sama_2652	0.39	-0.6
3,178,187	+		Sama_2652	0.39	+0.5
3,178,187	+		Sama_2652	0.39	+0.4
3,178,187	+		Sama_2652	0.39	-1.3
3,178,188	-		Sama_2652	0.39	-0.7
3,178,226	-		Sama_2652	0.44	-1.8
3,178,226	-		Sama_2652	0.44	-0.1
3,178,229	+		Sama_2652	0.45	+0.2
3,178,229	+		Sama_2652	0.45	-0.8
3,178,230	-		Sama_2652	0.45	-1.5
3,178,235	+		Sama_2652	0.46	-0.1
3,178,236	-		Sama_2652	0.46	-0.1
3,178,241	+		Sama_2652	0.47	-1.4
3,178,242	-		Sama_2652	0.47	-2.2
3,178,242	-		Sama_2652	0.47	-1.2
3,178,242	-		Sama_2652	0.47	+0.4
3,178,242	-		Sama_2652	0.47	-1.0
3,178,242	-		Sama_2652	0.47	+0.2
3,178,242	-		Sama_2652	0.47	-0.5
3,178,242	-		Sama_2652	0.47	-0.6
3,178,268	+		Sama_2652	0.50	+0.6
3,178,284	+		Sama_2652	0.52	+0.1
3,178,316	+		Sama_2652	0.57	-0.9
3,178,323	-		Sama_2652	0.58	+2.6
3,178,323	-		Sama_2652	0.58	-0.2
3,178,334	+		Sama_2652	0.59	-1.0
3,178,334	+		Sama_2652	0.59	+1.4
3,178,334	+		Sama_2652	0.59	-0.6
3,178,335	-		Sama_2652	0.59	-0.7
3,178,335	-		Sama_2652	0.59	+0.8
3,178,335	-		Sama_2652	0.59	+0.2
3,178,349	+		Sama_2652	0.61	-0.9
3,178,349	+		Sama_2652	0.61	+0.8
3,178,349	+		Sama_2652	0.61	-1.2
3,178,349	+		Sama_2652	0.61	-1.8
3,178,350	-		Sama_2652	0.61	+0.9
3,178,350	-		Sama_2652	0.61	-1.4
3,178,355	+		Sama_2652	0.62	-1.2
3,178,355	+		Sama_2652	0.62	-0.7
3,178,361	+		Sama_2652	0.63	-0.1
3,178,376	+		Sama_2652	0.65	-0.4
3,178,376	+		Sama_2652	0.65	-1.3
3,178,376	+		Sama_2652	0.65	-1.4
3,178,377	-		Sama_2652	0.65	-0.4
3,178,377	-		Sama_2652	0.65	-0.8
3,178,377	-		Sama_2652	0.65	+0.6
3,178,377	-		Sama_2652	0.65	-0.3
3,178,419	+		Sama_2652	0.71	-0.1
3,178,419	+		Sama_2652	0.71	-0.4
3,178,419	+		Sama_2652	0.71	-0.5
3,178,419	+		Sama_2652	0.71	+0.9
3,178,419	+		Sama_2652	0.71	+0.5
3,178,419	+		Sama_2652	0.71	-0.6
3,178,419	+		Sama_2652	0.71	+0.6
3,178,419	+		Sama_2652	0.71	-0.1
3,178,419	+		Sama_2652	0.71	+0.7
3,178,419	+		Sama_2652	0.71	-0.5
3,178,419	+		Sama_2652	0.71	+0.9
3,178,419	+		Sama_2652	0.71	-0.8
3,178,419	+		Sama_2652	0.71	+0.3
3,178,419	+		Sama_2652	0.71	-1.6
3,178,419	+		Sama_2652	0.71	-0.2
3,178,419	+		Sama_2652	0.71	-1.4
3,178,419	+		Sama_2652	0.71	+1.1
3,178,419	+		Sama_2652	0.71	-0.7
3,178,420	-		Sama_2652	0.71	-0.7
3,178,420	-		Sama_2652	0.71	+2.1
3,178,420	-		Sama_2652	0.71	-0.3
3,178,420	-		Sama_2652	0.71	+2.2
3,178,420	-		Sama_2652	0.71	-0.5
3,178,420	-		Sama_2652	0.71	-2.9
3,178,420	-		Sama_2652	0.71	-1.4
3,178,420	-		Sama_2652	0.71	+1.4
3,178,420	-		Sama_2652	0.71	-1.4
3,178,423	+		Sama_2652	0.71	-0.3
3,178,423	+		Sama_2652	0.71	-0.7
3,178,423	+		Sama_2652	0.71	+0.4
3,178,423	+		Sama_2652	0.71	-0.6
3,178,484	+		Sama_2652	0.80	-1.9
3,178,485	-		Sama_2652	0.80	-0.4
3,178,502	-		Sama_2652	0.82	-1.2
3,178,502	-		Sama_2652	0.82	-0.6
3,178,509	+		Sama_2652	0.83	-0.6
3,178,509	+		Sama_2652	0.83	-0.2
3,178,509	+		Sama_2652	0.83	+0.0
3,178,510	-		Sama_2652	0.83	-0.4
3,178,510	-		Sama_2652	0.83	-0.4
3,178,510	-		Sama_2652	0.83	+2.1
3,178,510	-		Sama_2652	0.83	-0.4
3,178,563	+				-1.0
3,178,563	+				-0.2
3,178,563	+				-1.3
3,178,563	+				-0.7
3,178,564	-				-1.4
3,178,564	-				-0.1
3,178,570	+				+0.3
3,178,570	+				-0.2
3,178,570	+				-1.6
3,178,571	-				-0.1
3,178,571	-				-1.0
3,178,614	+				+0.9
3,178,614	+				-0.3
3,178,615	-				-1.5
3,178,615	-				+0.6
3,178,619	+				-0.9
3,178,619	+				-0.4
3,178,620	-				+0.3
3,178,852	+				-0.9
3,178,852	+				-0.6
3,178,853	-				-2.4
3,178,853	-				+0.8
3,178,904	+				-0.8
3,178,904	+				+0.2
3,178,904	+				-0.3
3,178,904	+				-0.3
3,178,905	-				+1.3
3,178,905	-				+0.1
3,178,905	-				+2.1
3,178,905	-				-0.1
3,178,913	-				+2.2
3,178,928	+				+1.1
3,178,928	+				-0.7
3,178,928	+				-0.1
3,178,929	-				-0.1
3,178,929	-				+1.8
3,178,966	+				-0.4
3,178,977	-				-1.0
3,178,983	+				-0.7
3,178,983	+				-1.6
3,178,983	+				-0.6
3,178,983	+				+0.3
3,178,983	+				+0.5
3,178,984	-				-0.3
3,178,984	-				-0.4
3,179,019	+				-1.7
3,179,019	+				+0.4
3,179,020	-				-0.7
3,179,020	-				+0.4
3,179,020	-				+0.8
3,179,024	-				+0.1
3,179,024	-				+1.1
3,179,024	-				-1.1
3,179,024	-				+0.2
3,179,060	+		Sama_2654	0.13	+0.5
3,179,060	+		Sama_2654	0.13	+1.2
3,179,060	+		Sama_2654	0.13	+0.7
3,179,060	+		Sama_2654	0.13	-2.4
3,179,060	+		Sama_2654	0.13	+0.4
3,179,061	-		Sama_2654	0.13	-1.3
3,179,061	-		Sama_2654	0.13	-0.1
3,179,061	-		Sama_2654	0.13	-0.7
3,179,069	+		Sama_2654	0.16	-0.2
3,179,069	+		Sama_2654	0.16	-0.5
3,179,070	-		Sama_2654	0.16	+1.3
3,179,089	+		Sama_2654	0.21	-0.9
3,179,090	-		Sama_2654	0.22	+1.1
3,179,090	-		Sama_2654	0.22	+0.1
3,179,134	+		Sama_2654	0.34	-1.2
3,179,134	+		Sama_2654	0.34	+1.1
3,179,135	-		Sama_2654	0.35	+0.7
3,179,135	-		Sama_2654	0.35	+0.7
3,179,135	-		Sama_2654	0.35	-0.4
3,179,135	-		Sama_2654	0.35	-0.5
3,179,216	-		Sama_2654	0.58	+0.1
3,179,220	+		Sama_2654	0.59	-0.4
3,179,220	+		Sama_2654	0.59	-1.0
3,179,220	+		Sama_2654	0.59	+1.0
3,179,220	+		Sama_2654	0.59	+1.4
3,179,220	+		Sama_2654	0.59	+0.1
3,179,220	+		Sama_2654	0.59	-1.6
3,179,220	+		Sama_2654	0.59	-1.6
3,179,220	+		Sama_2654	0.59	-0.7
3,179,221	-		Sama_2654	0.60	+0.0
3,179,221	-		Sama_2654	0.60	-0.8
3,179,221	-		Sama_2654	0.60	-0.8
3,179,221	-		Sama_2654	0.60	-0.9
3,179,221	-		Sama_2654	0.60	-0.6
3,179,221	-		Sama_2654	0.60	+1.3
3,179,221	-		Sama_2654	0.60	-1.9
3,179,221	-		Sama_2654	0.60	-0.7
3,179,318	+		Sama_2654	0.88	-1.1
3,179,318	+		Sama_2654	0.88	+0.5
3,179,318	+		Sama_2654	0.88	+2.7
3,179,319	-		Sama_2654	0.88	-0.6
3,179,378	+				-0.9
3,179,378	+				+0.9
3,179,378	+				+0.5
3,179,379	-				+0.5
3,179,379	-				+0.4
3,179,393	+				+0.5
3,179,393	+				-0.1
3,179,441	+				+0.5
3,179,441	+				+0.1
3,179,441	+				+1.7
3,179,441	+				-0.9
3,179,441	+				+1.8
3,179,441	+				-1.7
3,179,442	-				+1.3
3,179,442	-				-0.2
3,179,442	-				-0.5
3,179,454	+				-1.5
3,179,454	+				-0.3
3,179,454	+				+1.6
3,179,455	-				+1.4
3,179,455	-				+0.1
3,179,455	-				+1.9
3,179,455	-				-0.4
3,179,455	-				+0.1
3,179,455	-				+2.4
3,179,455	-				-1.4
3,179,477	+				+1.0
3,179,477	+				-1.4
3,179,477	+				+1.1
3,179,478	-				+1.1
3,179,505	+				-1.7
3,179,505	+				+1.6
3,179,506	-				-1.0
3,179,506	-				-1.3
3,179,506	-				-0.2
3,179,506	-				+0.8
3,179,506	-				+1.3
3,179,519	+				+1.4
3,179,519	+				-0.1
3,179,556	+				+0.3
3,179,556	+				+0.3
3,179,556	+				+1.7
3,179,557	-				+0.8
3,179,557	-				-0.3
3,179,557	-				-0.1
3,179,557	-				-0.9
3,179,577	-				-0.3
3,179,579	+				+0.2
3,179,617	+				+0.1
3,179,621	+				-0.1