Strain Fitness in Shewanella amazonensis SB2B around Sama_2441

Experiment: D-Glucosamine Hydrochloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucosamine Hydrochloride (N)
2,937,422	+		Sama_2440	0.73	-0.3
2,937,422	+		Sama_2440	0.73	-0.1
2,937,422	+		Sama_2440	0.73	+0.3
2,937,423	-		Sama_2440	0.73	+0.7
2,937,423	-		Sama_2440	0.73	+0.2
2,937,423	-		Sama_2440	0.73	-0.2
2,937,506	-		Sama_2440	0.76	-1.5
2,937,506	-		Sama_2440	0.76	-0.9
2,937,506	-		Sama_2440	0.76	-1.9
2,937,584	+		Sama_2440	0.78	+0.9
2,937,584	+		Sama_2440	0.78	-0.7
2,937,585	-		Sama_2440	0.78	+0.0
2,937,608	-		Sama_2440	0.79	+0.8
2,937,742	-		Sama_2440	0.84	-0.5
2,937,845	+		Sama_2440	0.88	-0.6
2,937,845	+		Sama_2440	0.88	+1.3
2,937,845	+		Sama_2440	0.88	+0.5
2,937,845	+		Sama_2440	0.88	+1.1
2,937,845	+		Sama_2440	0.88	-1.0
2,937,846	-		Sama_2440	0.88	-0.9
2,937,846	-		Sama_2440	0.88	+1.0
2,937,949	-				-2.1
2,937,997	+				-2.0
2,937,997	+				-2.0
2,938,018	+				+0.9
2,938,018	+				-2.8
2,938,019	-				+1.6
2,938,019	-				-0.5
2,938,019	-				-1.0
2,938,091	-				-1.4
2,938,093	+				-0.6
2,938,093	+				-0.5
2,938,093	+				+1.9
2,938,093	+				+0.0
2,938,093	+				-0.3
2,938,093	+				-0.9
2,938,093	+				+1.7
2,938,094	-				+0.1
2,938,094	-				+1.4
2,938,104	+				-1.6
2,938,104	+				+1.3
2,938,104	+				-0.3
2,938,105	-				-0.6
2,938,105	-				-1.9
2,938,105	-				+0.1
2,938,105	-				-1.2
2,938,105	-				-0.2
2,938,137	+				-0.6
2,938,138	-				-0.2
2,938,138	-				-0.8
2,938,138	-				-1.1
2,938,159	+				-2.1
2,938,159	+				-1.3
2,938,159	+				-0.1
2,938,216	-				+1.3
2,938,312	-				-3.1
2,938,317	+				-0.9
2,938,318	-				-1.7
2,938,340	+				+0.6
2,938,340	+				-2.6
2,938,341	-				-2.6
2,938,341	-				-2.3
2,938,342	+				-0.7
2,938,342	+				-1.9
2,938,356	-				-2.0
2,938,356	-				-2.3
2,938,362	+				+0.4
2,938,362	+				-1.7
2,938,362	+				-1.7
2,938,362	+				-0.7
2,938,377	+				-1.9
2,938,377	+				-0.6
2,938,378	-				-1.8
2,938,378	-				-2.3
2,938,380	+				-0.5
2,938,380	+				-2.7
2,938,552	-		Sama_2441	0.18	-3.7
2,938,552	-		Sama_2441	0.18	-2.2
2,938,552	-		Sama_2441	0.18	-3.0
2,938,552	-		Sama_2441	0.18	-2.2
2,938,552	-		Sama_2441	0.18	-2.2
2,938,552	-		Sama_2441	0.18	-1.1
2,938,552	-		Sama_2441	0.18	-2.1
2,938,751	+		Sama_2441	0.45	-2.1
2,938,759	+		Sama_2441	0.46	-3.4
2,938,760	+		Sama_2441	0.46	-2.0
2,938,760	+		Sama_2441	0.46	-1.0
2,938,760	+		Sama_2441	0.46	-1.6
2,938,760	+		Sama_2441	0.46	-2.5
2,938,761	-		Sama_2441	0.46	-1.6
2,938,780	-		Sama_2441	0.49	-0.9
2,938,833	+		Sama_2441	0.56	+0.9
2,938,833	+		Sama_2441	0.56	-1.5
2,938,834	-		Sama_2441	0.56	-2.3
2,938,834	-		Sama_2441	0.56	-2.2
2,938,834	-		Sama_2441	0.56	-1.9
2,938,862	-		Sama_2441	0.60	-1.9
2,938,862	-		Sama_2441	0.60	-3.1
2,938,862	-		Sama_2441	0.60	-1.9
2,938,876	+		Sama_2441	0.62	-2.6
2,938,895	+		Sama_2441	0.64	-2.2
2,938,896	-		Sama_2441	0.64	-1.5
2,938,896	-		Sama_2441	0.64	-3.4
2,938,896	-		Sama_2441	0.64	-2.3
2,938,917	-		Sama_2441	0.67	-2.0
2,938,927	+		Sama_2441	0.69	-1.6
2,939,035	-		Sama_2441	0.83	-2.1
2,939,047	+		Sama_2441	0.85	-2.4
2,939,047	+		Sama_2441	0.85	-2.3
2,939,047	+		Sama_2441	0.85	-0.7
2,939,047	+		Sama_2441	0.85	-0.3
2,939,048	-		Sama_2441	0.85	-2.6
2,939,048	-		Sama_2441	0.85	-2.0
2,939,048	-		Sama_2441	0.85	-1.2
2,939,048	-		Sama_2441	0.85	-2.0
2,939,048	-		Sama_2441	0.85	-1.1
2,939,048	-		Sama_2441	0.85	-2.8
2,939,048	-		Sama_2441	0.85	-1.9
2,939,092	-				-2.9
2,939,158	+				-1.3
2,939,158	+				-1.6
2,939,239	-				-1.5
2,939,239	-				-1.5
2,939,350	+		Sama_2442	0.13	-3.5
2,939,355	+		Sama_2442	0.13	-3.7
2,939,355	+		Sama_2442	0.13	-3.0
2,939,356	-		Sama_2442	0.13	-0.9
2,939,372	+		Sama_2442	0.14	-2.2
2,939,373	-		Sama_2442	0.14	-2.7
2,939,412	+		Sama_2442	0.17	-2.1
2,939,412	+		Sama_2442	0.17	-0.9
2,939,412	+		Sama_2442	0.17	-1.9
2,939,412	+		Sama_2442	0.17	+0.4
2,939,413	-		Sama_2442	0.17	-2.0
2,939,464	+		Sama_2442	0.21	-1.5
2,939,568	+		Sama_2442	0.28	-1.1
2,939,568	+		Sama_2442	0.28	-2.5
2,939,568	+		Sama_2442	0.28	-1.4
2,939,568	+		Sama_2442	0.28	-0.5
2,939,568	+		Sama_2442	0.28	-3.0
2,939,569	-		Sama_2442	0.28	-2.4
2,939,569	-		Sama_2442	0.28	-3.4
2,939,572	+		Sama_2442	0.28	-2.7
2,939,572	+		Sama_2442	0.28	+0.0
2,939,590	+		Sama_2442	0.30	-0.6
2,939,594	-		Sama_2442	0.30	-2.5
2,939,625	+		Sama_2442	0.32	-1.2
2,939,625	+		Sama_2442	0.32	-1.9
2,939,625	+		Sama_2442	0.32	-0.1
2,939,626	-		Sama_2442	0.32	-2.3
2,939,626	-		Sama_2442	0.32	-2.7
2,939,626	-		Sama_2442	0.32	-3.9
2,939,892	+		Sama_2442	0.51	-2.8
2,939,893	-		Sama_2442	0.51	-1.3
2,939,893	-		Sama_2442	0.51	-3.1
2,939,893	-		Sama_2442	0.51	-1.6
2,939,897	-		Sama_2442	0.52	-1.2
2,939,978	+		Sama_2442	0.57	-3.1
2,939,979	-		Sama_2442	0.57	-1.0
2,939,979	-		Sama_2442	0.57	-3.7
2,939,991	-		Sama_2442	0.58	-2.7
2,939,995	+		Sama_2442	0.59	-4.1
2,940,037	+		Sama_2442	0.62	-4.0
2,940,038	-		Sama_2442	0.62	-2.6
2,940,115	+		Sama_2442	0.67	-2.4
2,940,116	-		Sama_2442	0.67	-0.2
2,940,116	-		Sama_2442	0.67	-2.9
2,940,128	+		Sama_2442	0.68	-1.8
2,940,146	+		Sama_2442	0.69	-1.8
2,940,146	+		Sama_2442	0.69	-3.0
2,940,152	+		Sama_2442	0.70	-1.3
2,940,152	+		Sama_2442	0.70	-4.5
2,940,152	+		Sama_2442	0.70	-3.1
2,940,153	-		Sama_2442	0.70	-2.0
2,940,153	-		Sama_2442	0.70	-3.8
2,940,153	-		Sama_2442	0.70	-2.4
2,940,153	-		Sama_2442	0.70	-1.0
2,940,153	-		Sama_2442	0.70	-0.6
2,940,153	-		Sama_2442	0.70	-1.5