Strain Fitness in Shewanella amazonensis SB2B around Sama_1024

Experiment: D-Glucosamine Hydrochloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucosamine Hydrochloride (N)
1,237,236	+		Sama_1023	0.38	+0.9
1,237,254	+		Sama_1023	0.39	-3.1
1,237,292	-		Sama_1023	0.42	-0.6
1,237,330	+		Sama_1023	0.44	+0.2
1,237,330	+		Sama_1023	0.44	+0.5
1,237,331	-		Sama_1023	0.44	-1.2
1,237,331	-		Sama_1023	0.44	+0.5
1,237,355	+		Sama_1023	0.45	-0.7
1,237,355	+		Sama_1023	0.45	-0.8
1,237,355	+		Sama_1023	0.45	+0.8
1,237,355	+		Sama_1023	0.45	-0.1
1,237,356	-		Sama_1023	0.46	-0.4
1,237,357	+		Sama_1023	0.46	-0.3
1,237,358	-		Sama_1023	0.46	+1.6
1,237,377	+		Sama_1023	0.47	+0.5
1,237,377	+		Sama_1023	0.47	+0.6
1,237,377	+		Sama_1023	0.47	-0.6
1,237,377	+		Sama_1023	0.47	+0.2
1,237,378	-		Sama_1023	0.47	+0.8
1,237,378	-		Sama_1023	0.47	-2.1
1,237,378	-		Sama_1023	0.47	+2.2
1,237,465	-		Sama_1023	0.52	-1.3
1,237,470	+		Sama_1023	0.53	+0.2
1,237,471	-		Sama_1023	0.53	-0.4
1,237,471	-		Sama_1023	0.53	+0.3
1,237,471	-		Sama_1023	0.53	-0.4
1,237,528	+		Sama_1023	0.56	-1.2
1,237,552	+		Sama_1023	0.58	+0.8
1,237,552	+		Sama_1023	0.58	-0.8
1,237,634	+		Sama_1023	0.63	+0.4
1,237,634	+		Sama_1023	0.63	-0.1
1,237,634	+		Sama_1023	0.63	+0.1
1,237,635	-		Sama_1023	0.63	-0.7
1,237,635	-		Sama_1023	0.63	+0.3
1,237,654	+		Sama_1023	0.64	+0.7
1,237,654	+		Sama_1023	0.64	-0.2
1,237,654	+		Sama_1023	0.64	+1.2
1,237,658	+		Sama_1023	0.65	+0.7
1,237,658	+		Sama_1023	0.65	-0.4
1,237,658	+		Sama_1023	0.65	-2.4
1,237,659	-		Sama_1023	0.65	-0.3
1,237,659	-		Sama_1023	0.65	+1.6
1,237,659	-		Sama_1023	0.65	+0.1
1,237,659	-		Sama_1023	0.65	-0.8
1,237,659	-		Sama_1023	0.65	+0.0
1,237,659	-		Sama_1023	0.65	+1.1
1,237,766	+		Sama_1023	0.71	+1.0
1,237,766	+		Sama_1023	0.71	-2.3
1,237,766	+		Sama_1023	0.71	-0.7
1,237,766	+		Sama_1023	0.71	-0.5
1,237,767	-		Sama_1023	0.71	-0.3
1,237,767	-		Sama_1023	0.71	-1.2
1,237,797	+		Sama_1023	0.73	-0.3
1,237,857	+		Sama_1023	0.77	+0.1
1,237,858	-		Sama_1023	0.77	-0.4
1,237,915	+		Sama_1023	0.81	+0.2
1,237,916	-		Sama_1023	0.81	-0.4
1,237,986	+		Sama_1023	0.85	-1.1
1,237,987	-		Sama_1023	0.85	+0.7
1,237,987	-		Sama_1023	0.85	-0.7
1,237,987	-		Sama_1023	0.85	+0.5
1,237,990	+		Sama_1023	0.85	+0.5
1,237,990	+		Sama_1023	0.85	-0.8
1,237,990	+		Sama_1023	0.85	-0.1
1,238,034	+		Sama_1023	0.88	+0.3
1,238,034	+		Sama_1023	0.88	-0.8
1,238,034	+		Sama_1023	0.88	-2.3
1,238,034	+		Sama_1023	0.88	-1.2
1,238,035	-		Sama_1023	0.88	+1.0
1,238,035	-		Sama_1023	0.88	+0.3
1,238,035	-		Sama_1023	0.88	-0.8
1,238,158	+				-1.0
1,238,158	+				-1.5
1,238,158	+				+0.9
1,238,225	+				-1.8
1,238,225	+				-0.9
1,238,269	+				-0.2
1,238,282	+				+1.4
1,238,310	+		Sama_1024	0.12	-1.4
1,238,311	-		Sama_1024	0.12	-1.1
1,238,311	-		Sama_1024	0.12	-2.5
1,238,311	-		Sama_1024	0.12	-1.3
1,238,330	+		Sama_1024	0.15	-2.0
1,238,369	+		Sama_1024	0.20	-0.1
1,238,370	-		Sama_1024	0.20	-0.1
1,238,374	+		Sama_1024	0.20	-0.6
1,238,374	+		Sama_1024	0.20	+0.4
1,238,374	+		Sama_1024	0.20	-0.1
1,238,374	+		Sama_1024	0.20	+0.1
1,238,374	+		Sama_1024	0.20	-2.0
1,238,374	+		Sama_1024	0.20	-1.4
1,238,374	+		Sama_1024	0.20	-0.1
1,238,374	+		Sama_1024	0.20	+1.2
1,238,374	+		Sama_1024	0.20	-0.5
1,238,374	+		Sama_1024	0.20	+0.7
1,238,374	+		Sama_1024	0.20	-0.6
1,238,374	+		Sama_1024	0.20	+0.2
1,238,374	+		Sama_1024	0.20	-1.1
1,238,375	-		Sama_1024	0.21	-0.0
1,238,375	-		Sama_1024	0.21	-1.5
1,238,375	-		Sama_1024	0.21	-1.2
1,238,375	-		Sama_1024	0.21	+0.7
1,238,375	-		Sama_1024	0.21	+0.2
1,238,375	-		Sama_1024	0.21	+0.6
1,238,375	-		Sama_1024	0.21	+0.6
1,238,375	-		Sama_1024	0.21	-0.8
1,238,375	-		Sama_1024	0.21	-1.4
1,238,378	+		Sama_1024	0.21	-1.0
1,238,378	+		Sama_1024	0.21	-0.1
1,238,378	+		Sama_1024	0.21	-1.3
1,238,379	-		Sama_1024	0.21	+1.7
1,238,379	-		Sama_1024	0.21	-1.1
1,238,379	-		Sama_1024	0.21	-1.3
1,238,413	+		Sama_1024	0.25	+0.7
1,238,422	+		Sama_1024	0.27	-0.1
1,238,422	+		Sama_1024	0.27	-0.4
1,238,493	+		Sama_1024	0.36	+1.1
1,238,494	-		Sama_1024	0.36	-0.1
1,238,494	-		Sama_1024	0.36	-0.7
1,238,525	+		Sama_1024	0.40	+1.0
1,238,525	+		Sama_1024	0.40	+0.4
1,238,526	-		Sama_1024	0.40	-0.8
1,238,669	+		Sama_1024	0.58	-1.5
1,238,670	-		Sama_1024	0.58	+0.1
1,238,670	-		Sama_1024	0.58	-0.4
1,238,687	+		Sama_1024	0.60	-0.6
1,238,688	-		Sama_1024	0.61	-2.2
1,238,688	-		Sama_1024	0.61	+0.5
1,238,688	-		Sama_1024	0.61	+1.9
1,238,849	-		Sama_1024	0.81	-1.3
1,238,869	+		Sama_1024	0.84	-0.2
1,238,870	-		Sama_1024	0.84	+0.5
1,238,870	-		Sama_1024	0.84	-0.8
1,238,880	+		Sama_1024	0.85	-0.1
1,238,880	+		Sama_1024	0.85	-1.3
1,238,880	+		Sama_1024	0.85	-1.8
1,238,880	+		Sama_1024	0.85	+0.6
1,238,926	+				-1.2
1,238,926	+				+0.4
1,238,926	+				+0.3
1,238,927	-				-1.1
1,238,927	-				+0.2
1,238,927	-				+1.0
1,238,994	+				+0.5
1,238,994	+				+0.6
1,238,995	-				+0.9
1,238,995	-				+1.7
1,238,995	-				+0.2
1,238,995	-				+1.3
1,238,999	+				-1.7
1,239,000	-				-0.5
1,239,000	-				+0.0
1,239,019	+				-1.0
1,239,024	+				-0.1
1,239,036	+				-2.1
1,239,036	+				+0.4
1,239,036	+				-0.7
1,239,048	+				+1.9
1,239,048	+				-0.8
1,239,049	-				-0.2
1,239,049	-				-0.3
1,239,049	-				-1.4
1,239,049	-				+1.5
1,239,049	-				+0.3
1,239,049	-				-0.0
1,239,081	+				+0.7
1,239,083	+				-0.3
1,239,083	+				-0.5
1,239,083	+				+1.0
1,239,083	+				-0.6
1,239,083	+				+1.3
1,239,083	+				-1.9
1,239,083	+				+0.7
1,239,083	+				+1.7
1,239,083	+				-0.8
1,239,083	+				-1.0
1,239,083	+				+1.4
1,239,084	-				-2.5
1,239,084	-				+0.3
1,239,084	-				+0.5
1,239,084	-				+0.0
1,239,084	-				+0.2
1,239,087	+				+0.6
1,239,087	+				-0.7
1,239,088	-				+0.5
1,239,088	-				-1.1
1,239,104	-				-0.4
1,239,139	+				-1.0
1,239,139	+				-1.7
1,239,139	+				+0.3
1,239,140	-				+0.6
1,239,140	-				-1.4
1,239,140	-				+1.2
1,239,145	+				-0.2
1,239,145	+				-1.4
1,239,145	+				+0.6
1,239,145	+				+0.4
1,239,146	-				-0.4
1,239,146	-				+1.2
1,239,154	+				+1.5
1,239,154	+				+0.6
1,239,155	-				+0.3
1,239,155	-				-0.9
1,239,155	-				-0.7
1,239,155	-				+0.1
1,239,189	-		Sama_1025	0.11	-1.1
1,239,218	+		Sama_1025	0.12	-0.1
1,239,218	+		Sama_1025	0.12	-0.7
1,239,218	+		Sama_1025	0.12	+0.4
1,239,218	+		Sama_1025	0.12	-0.2
1,239,219	-		Sama_1025	0.12	+0.3
1,239,219	-		Sama_1025	0.12	-0.4
1,239,219	-		Sama_1025	0.12	-0.4
1,239,219	-		Sama_1025	0.12	-1.2
1,239,263	-		Sama_1025	0.15	+1.6
1,239,278	+		Sama_1025	0.15	-0.7
1,239,278	+		Sama_1025	0.15	-3.4
1,239,278	+		Sama_1025	0.15	+0.1
1,239,278	+		Sama_1025	0.15	+0.8
1,239,278	+		Sama_1025	0.15	-0.8
1,239,278	+		Sama_1025	0.15	-1.0
1,239,278	+		Sama_1025	0.15	-0.5
1,239,278	+		Sama_1025	0.15	-0.6
1,239,279	-		Sama_1025	0.15	-0.2
1,239,279	-		Sama_1025	0.15	-0.9
1,239,279	-		Sama_1025	0.15	+0.4
1,239,279	-		Sama_1025	0.15	+1.6
1,239,279	-		Sama_1025	0.15	+1.7
1,239,279	-		Sama_1025	0.15	-1.3
1,239,279	-		Sama_1025	0.15	-0.6
1,239,279	-		Sama_1025	0.15	-0.9
1,239,279	-		Sama_1025	0.15	-0.7
1,239,280	+		Sama_1025	0.16	+0.2
1,239,378	+		Sama_1025	0.21	-0.3
1,239,378	+		Sama_1025	0.21	-0.6
1,239,526	+		Sama_1025	0.29	-0.3
1,239,526	+		Sama_1025	0.29	-1.3
1,239,527	-		Sama_1025	0.29	-0.7
1,239,527	-		Sama_1025	0.29	-0.1
1,239,595	-		Sama_1025	0.33	-0.2
1,239,595	-		Sama_1025	0.33	+0.2
1,239,595	-		Sama_1025	0.33	+0.3
1,239,595	-		Sama_1025	0.33	-0.3
1,239,650	+		Sama_1025	0.36	+0.8
1,239,650	+		Sama_1025	0.36	+1.5
1,239,650	+		Sama_1025	0.36	-0.1
1,239,680	-		Sama_1025	0.38	-1.8
1,239,699	+		Sama_1025	0.39	+0.1
1,239,700	-		Sama_1025	0.39	-0.2
1,239,769	+		Sama_1025	0.42	+0.1
1,239,769	+		Sama_1025	0.42	-0.2
1,239,810	+		Sama_1025	0.45	-0.6
1,239,811	-		Sama_1025	0.45	+0.1
1,239,872	+		Sama_1025	0.48	-0.1
1,239,872	+		Sama_1025	0.48	-0.4
1,239,873	-		Sama_1025	0.48	+0.2
1,239,873	-		Sama_1025	0.48	-1.1
1,239,873	-		Sama_1025	0.48	-1.3
1,239,873	-		Sama_1025	0.48	-0.1
1,239,899	+		Sama_1025	0.50	-1.0
1,239,899	+		Sama_1025	0.50	+0.4
1,239,900	-		Sama_1025	0.50	-1.9
1,239,900	-		Sama_1025	0.50	+0.2
1,239,920	+		Sama_1025	0.51	+1.4
1,239,920	+		Sama_1025	0.51	+0.0
1,239,920	+		Sama_1025	0.51	+0.3
1,239,920	+		Sama_1025	0.51	+0.4
1,239,920	+		Sama_1025	0.51	+0.1
1,239,921	-		Sama_1025	0.51	-1.2
1,239,921	-		Sama_1025	0.51	-0.8
1,239,921	-		Sama_1025	0.51	+0.9
1,239,921	-		Sama_1025	0.51	-0.3
1,239,921	-		Sama_1025	0.51	+0.7
1,239,921	-		Sama_1025	0.51	+0.6
1,239,921	-		Sama_1025	0.51	-0.5
1,239,921	-		Sama_1025	0.51	-1.6
1,239,954	+		Sama_1025	0.53	-0.2
1,239,954	+		Sama_1025	0.53	+0.3
1,239,954	+		Sama_1025	0.53	-0.8
1,239,954	+		Sama_1025	0.53	-0.4
1,239,954	+		Sama_1025	0.53	+2.0
1,239,954	+		Sama_1025	0.53	-1.2
1,239,954	+		Sama_1025	0.53	+1.9
1,239,954	+		Sama_1025	0.53	+1.4
1,239,954	+		Sama_1025	0.53	+1.5
1,239,954	+		Sama_1025	0.53	+0.2
1,239,954	+		Sama_1025	0.53	-0.1
1,239,955	-		Sama_1025	0.53	+0.7
1,239,955	-		Sama_1025	0.53	-0.7
1,239,955	-		Sama_1025	0.53	-1.0
1,239,955	-		Sama_1025	0.53	+0.3
1,239,955	-		Sama_1025	0.53	-1.1
1,239,955	-		Sama_1025	0.53	+1.2
1,239,955	-		Sama_1025	0.53	+0.3
1,239,955	-		Sama_1025	0.53	-1.0
1,239,956	+		Sama_1025	0.53	-0.0
1,239,956	+		Sama_1025	0.53	+1.0
1,239,956	+		Sama_1025	0.53	+1.3
1,239,956	+		Sama_1025	0.53	+0.5
1,239,956	+		Sama_1025	0.53	-1.0
1,239,956	+		Sama_1025	0.53	-0.1
1,239,956	+		Sama_1025	0.53	-0.3
1,239,956	+		Sama_1025	0.53	+0.1
1,239,956	+		Sama_1025	0.53	-2.0
1,239,956	+		Sama_1025	0.53	-0.9
1,239,957	-		Sama_1025	0.53	+1.1
1,239,957	-		Sama_1025	0.53	-1.9
1,239,957	-		Sama_1025	0.53	-1.7
1,239,957	-		Sama_1025	0.53	+0.8
1,239,957	-		Sama_1025	0.53	+0.2
1,239,957	-		Sama_1025	0.53	+0.7