Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0541 and Sama_0542 are separated by 204 nucleotides Sama_0542 and Sama_0543 are separated by 68 nucleotides Sama_0543 and Sama_0544 are separated by 125 nucleotides
Sama_0541: Sama_0541 - serine/threonine protein kinase, putative (RefSeq), at 666,263 to 668,083
_0541
Sama_0542: Sama_0542 - hypothetical protein (RefSeq), at 668,288 to 668,632
_0542
Sama_0543: Sama_0543 - thiopurine S-methyltransferase (RefSeq), at 668,701 to 669,357
_0543
Sama_0544: Sama_0544 - outer membrane porin, putative (RefSeq), at 669,483 to 670,568
_0544
Position (kb) 668
669 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 667.332 kb on + strand, within Sama_0541 at 667.333 kb on - strand, within Sama_0541 at 667.347 kb on - strand, within Sama_0541 at 667.410 kb on + strand, within Sama_0541 at 667.410 kb on + strand, within Sama_0541 at 667.410 kb on + strand, within Sama_0541 at 667.410 kb on + strand, within Sama_0541 at 667.410 kb on + strand, within Sama_0541 at 667.411 kb on - strand, within Sama_0541 at 667.435 kb on + strand, within Sama_0541 at 667.436 kb on - strand, within Sama_0541 at 667.436 kb on - strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.467 kb on - strand, within Sama_0541 at 667.467 kb on - strand, within Sama_0541 at 667.467 kb on - strand, within Sama_0541 at 667.538 kb on + strand, within Sama_0541 at 667.538 kb on + strand, within Sama_0541 at 667.539 kb on - strand, within Sama_0541 at 667.539 kb on - strand, within Sama_0541 at 667.539 kb on - strand, within Sama_0541 at 667.561 kb on - strand, within Sama_0541 at 667.561 kb on - strand, within Sama_0541 at 667.561 kb on - strand, within Sama_0541 at 667.561 kb on - strand, within Sama_0541 at 667.613 kb on - strand, within Sama_0541 at 667.613 kb on - strand, within Sama_0541 at 667.613 kb on - strand, within Sama_0541 at 667.613 kb on - strand, within Sama_0541 at 667.617 kb on + strand, within Sama_0541 at 667.617 kb on + strand, within Sama_0541 at 667.617 kb on + strand, within Sama_0541 at 667.667 kb on - strand, within Sama_0541 at 667.667 kb on - strand, within Sama_0541 at 667.804 kb on + strand, within Sama_0541 at 667.804 kb on + strand, within Sama_0541 at 667.804 kb on + strand, within Sama_0541 at 667.805 kb on - strand, within Sama_0541 at 667.805 kb on - strand, within Sama_0541 at 667.849 kb on + strand, within Sama_0541 at 667.849 kb on + strand, within Sama_0541 at 667.849 kb on + strand, within Sama_0541 at 667.850 kb on - strand, within Sama_0541 at 667.850 kb on - strand, within Sama_0541 at 667.850 kb on - strand, within Sama_0541 at 667.850 kb on - strand, within Sama_0541 at 667.850 kb on - strand, within Sama_0541 at 667.852 kb on + strand, within Sama_0541 at 667.868 kb on + strand, within Sama_0541 at 667.868 kb on + strand, within Sama_0541 at 667.868 kb on + strand, within Sama_0541 at 667.869 kb on - strand, within Sama_0541 at 667.869 kb on - strand, within Sama_0541 at 667.869 kb on - strand, within Sama_0541 at 667.869 kb on - strand, within Sama_0541 at 667.937 kb on + strand at 667.937 kb on + strand at 667.937 kb on + strand at 667.937 kb on + strand at 667.938 kb on - strand at 667.938 kb on - strand at 667.973 kb on - strand at 667.973 kb on - strand at 667.973 kb on - strand at 667.973 kb on - strand at 667.982 kb on + strand at 667.999 kb on + strand at 668.025 kb on + strand at 668.025 kb on + strand at 668.026 kb on - strand at 668.026 kb on - strand at 668.047 kb on + strand at 668.049 kb on + strand at 668.050 kb on - strand at 668.050 kb on - strand at 668.106 kb on - strand at 668.108 kb on + strand at 668.108 kb on + strand at 668.109 kb on - strand at 668.109 kb on - strand at 668.109 kb on - strand at 668.119 kb on + strand at 668.149 kb on + strand at 668.150 kb on - strand at 668.150 kb on - strand at 668.165 kb on - strand at 668.236 kb on - strand at 668.236 kb on - strand at 668.236 kb on - strand at 668.244 kb on - strand at 668.244 kb on - strand at 668.245 kb on + strand at 668.245 kb on + strand at 668.324 kb on + strand, within Sama_0542 at 668.325 kb on - strand, within Sama_0542 at 668.338 kb on + strand, within Sama_0542 at 668.338 kb on + strand, within Sama_0542 at 668.338 kb on + strand, within Sama_0542 at 668.338 kb on + strand, within Sama_0542 at 668.339 kb on - strand, within Sama_0542 at 668.344 kb on + strand, within Sama_0542 at 668.345 kb on - strand, within Sama_0542 at 668.390 kb on + strand, within Sama_0542 at 668.390 kb on + strand, within Sama_0542 at 668.390 kb on + strand, within Sama_0542 at 668.390 kb on + strand, within Sama_0542 at 668.391 kb on - strand, within Sama_0542 at 668.392 kb on + strand, within Sama_0542 at 668.393 kb on - strand, within Sama_0542 at 668.417 kb on + strand, within Sama_0542 at 668.417 kb on + strand, within Sama_0542 at 668.417 kb on + strand, within Sama_0542 at 668.417 kb on + strand, within Sama_0542 at 668.418 kb on - strand, within Sama_0542 at 668.418 kb on - strand, within Sama_0542 at 668.418 kb on - strand, within Sama_0542 at 668.418 kb on - strand, within Sama_0542 at 668.501 kb on - strand, within Sama_0542 at 668.501 kb on - strand, within Sama_0542 at 668.501 kb on - strand, within Sama_0542 at 668.523 kb on + strand, within Sama_0542 at 668.552 kb on + strand, within Sama_0542 at 668.553 kb on - strand, within Sama_0542 at 668.553 kb on - strand, within Sama_0542 at 668.664 kb on + strand at 668.670 kb on - strand at 668.689 kb on + strand at 668.690 kb on - strand at 668.811 kb on + strand, within Sama_0543 at 668.811 kb on + strand, within Sama_0543 at 668.812 kb on - strand, within Sama_0543 at 668.812 kb on - strand, within Sama_0543 at 668.975 kb on + strand, within Sama_0543 at 668.975 kb on + strand, within Sama_0543 at 668.975 kb on + strand, within Sama_0543 at 668.975 kb on + strand, within Sama_0543 at 668.976 kb on - strand, within Sama_0543 at 668.976 kb on - strand, within Sama_0543 at 668.976 kb on - strand, within Sama_0543 at 668.976 kb on - strand, within Sama_0543 at 669.005 kb on + strand, within Sama_0543 at 669.006 kb on - strand, within Sama_0543 at 669.006 kb on - strand, within Sama_0543 at 669.109 kb on + strand, within Sama_0543 at 669.109 kb on + strand, within Sama_0543 at 669.109 kb on + strand, within Sama_0543 at 669.109 kb on + strand, within Sama_0543 at 669.110 kb on - strand, within Sama_0543 at 669.117 kb on + strand, within Sama_0543 at 669.118 kb on - strand, within Sama_0543 at 669.131 kb on + strand, within Sama_0543 at 669.131 kb on + strand, within Sama_0543 at 669.162 kb on + strand, within Sama_0543 at 669.162 kb on + strand, within Sama_0543 at 669.162 kb on + strand, within Sama_0543 at 669.245 kb on - strand, within Sama_0543 at 669.257 kb on + strand, within Sama_0543 at 669.257 kb on + strand, within Sama_0543 at 669.337 kb on + strand at 669.337 kb on + strand at 669.337 kb on + strand at 669.337 kb on + strand at 669.351 kb on + strand at 669.351 kb on + strand at 669.352 kb on - strand at 669.355 kb on + strand at 669.355 kb on + strand at 669.355 kb on + strand at 669.364 kb on + strand at 669.364 kb on + strand at 669.376 kb on + strand at 669.376 kb on + strand at 669.376 kb on + strand at 669.376 kb on + strand at 669.377 kb on - strand at 669.377 kb on - strand at 669.377 kb on - strand at 669.485 kb on - strand at 669.485 kb on - strand at 669.493 kb on + strand at 669.494 kb on - strand at 669.494 kb on - strand at 669.498 kb on + strand at 669.498 kb on + strand at 669.498 kb on + strand at 669.499 kb on - strand at 669.499 kb on - strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.577 kb on + strand at 669.577 kb on + strand at 669.578 kb on - strand at 669.613 kb on + strand, within Sama_0544 at 669.629 kb on + strand, within Sama_0544 at 669.629 kb on + strand, within Sama_0544 at 669.629 kb on + strand, within Sama_0544 at 669.629 kb on + strand, within Sama_0544 at 669.630 kb on - strand, within Sama_0544 at 669.630 kb on - strand, within Sama_0544
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 667,332 + Sama_0541 0.59 +1.7 667,333 - Sama_0541 0.59 -1.0 667,347 - Sama_0541 0.60 +1.7 667,410 + Sama_0541 0.63 -0.7 667,410 + Sama_0541 0.63 +0.6 667,410 + Sama_0541 0.63 -1.0 667,410 + Sama_0541 0.63 -1.0 667,410 + Sama_0541 0.63 -1.0 667,411 - Sama_0541 0.63 -0.6 667,435 + Sama_0541 0.64 -2.0 667,436 - Sama_0541 0.64 -2.9 667,436 - Sama_0541 0.64 -0.4 667,466 + Sama_0541 0.66 -2.4 667,466 + Sama_0541 0.66 -0.1 667,466 + Sama_0541 0.66 -2.2 667,466 + Sama_0541 0.66 -0.2 667,466 + Sama_0541 0.66 -0.7 667,466 + Sama_0541 0.66 -1.2 667,466 + Sama_0541 0.66 -2.7 667,466 + Sama_0541 0.66 -0.1 667,466 + Sama_0541 0.66 -0.6 667,466 + Sama_0541 0.66 -1.5 667,467 - Sama_0541 0.66 -0.2 667,467 - Sama_0541 0.66 -1.2 667,467 - Sama_0541 0.66 -1.6 667,538 + Sama_0541 0.70 +0.2 667,538 + Sama_0541 0.70 -2.8 667,539 - Sama_0541 0.70 -2.3 667,539 - Sama_0541 0.70 -0.6 667,539 - Sama_0541 0.70 +0.7 667,561 - Sama_0541 0.71 -0.1 667,561 - Sama_0541 0.71 -0.7 667,561 - Sama_0541 0.71 -1.2 667,561 - Sama_0541 0.71 -2.1 667,613 - Sama_0541 0.74 +0.1 667,613 - Sama_0541 0.74 +0.2 667,613 - Sama_0541 0.74 -1.4 667,613 - Sama_0541 0.74 -1.7 667,617 + Sama_0541 0.74 -1.5 667,617 + Sama_0541 0.74 -2.4 667,617 + Sama_0541 0.74 -1.1 667,667 - Sama_0541 0.77 -1.0 667,667 - Sama_0541 0.77 -1.9 667,804 + Sama_0541 0.85 -1.2 667,804 + Sama_0541 0.85 -0.3 667,804 + Sama_0541 0.85 -1.2 667,805 - Sama_0541 0.85 +0.0 667,805 - Sama_0541 0.85 -2.1 667,849 + Sama_0541 0.87 -0.1 667,849 + Sama_0541 0.87 +0.8 667,849 + Sama_0541 0.87 -2.1 667,850 - Sama_0541 0.87 -0.1 667,850 - Sama_0541 0.87 -1.2 667,850 - Sama_0541 0.87 +0.6 667,850 - Sama_0541 0.87 -0.4 667,850 - Sama_0541 0.87 +0.1 667,852 + Sama_0541 0.87 -0.3 667,868 + Sama_0541 0.88 -0.1 667,868 + Sama_0541 0.88 -1.1 667,868 + Sama_0541 0.88 -1.3 667,869 - Sama_0541 0.88 +0.5 667,869 - Sama_0541 0.88 -1.2 667,869 - Sama_0541 0.88 -1.7 667,869 - Sama_0541 0.88 -0.4 667,937 + +0.5 667,937 + -1.4 667,937 + +0.7 667,937 + -0.9 667,938 - -0.4 667,938 - -1.7 667,973 - +0.9 667,973 - -1.6 667,973 - +0.1 667,973 - -0.0 667,982 + -1.7 667,999 + -2.0 668,025 + -1.9 668,025 + -2.6 668,026 - -0.4 668,026 - +0.3 668,047 + +1.2 668,049 + -1.5 668,050 - -1.7 668,050 - -1.0 668,106 - -1.8 668,108 + -1.8 668,108 + -1.9 668,109 - -0.9 668,109 - -0.6 668,109 - -1.5 668,119 + +0.1 668,149 + -0.8 668,150 - -2.4 668,150 - -0.4 668,165 - -1.4 668,236 - +0.6 668,236 - +0.4 668,236 - +0.5 668,244 - -1.4 668,244 - -1.1 668,245 + -1.8 668,245 + +0.1 668,324 + Sama_0542 0.10 -0.0 668,325 - Sama_0542 0.11 +1.1 668,338 + Sama_0542 0.14 +0.5 668,338 + Sama_0542 0.14 -0.5 668,338 + Sama_0542 0.14 +1.0 668,338 + Sama_0542 0.14 -1.6 668,339 - Sama_0542 0.15 +1.9 668,344 + Sama_0542 0.16 -0.2 668,345 - Sama_0542 0.17 -0.5 668,390 + Sama_0542 0.30 +1.0 668,390 + Sama_0542 0.30 -2.2 668,390 + Sama_0542 0.30 +0.5 668,390 + Sama_0542 0.30 -0.2 668,391 - Sama_0542 0.30 -1.7 668,392 + Sama_0542 0.30 -0.4 668,393 - Sama_0542 0.30 +0.3 668,417 + Sama_0542 0.37 +0.3 668,417 + Sama_0542 0.37 -1.3 668,417 + Sama_0542 0.37 -3.1 668,417 + Sama_0542 0.37 -0.6 668,418 - Sama_0542 0.38 -0.0 668,418 - Sama_0542 0.38 +1.8 668,418 - Sama_0542 0.38 -0.5 668,418 - Sama_0542 0.38 +1.9 668,501 - Sama_0542 0.62 -0.3 668,501 - Sama_0542 0.62 +0.4 668,501 - Sama_0542 0.62 +0.4 668,523 + Sama_0542 0.68 +1.0 668,552 + Sama_0542 0.77 -1.3 668,553 - Sama_0542 0.77 -3.1 668,553 - Sama_0542 0.77 -0.9 668,664 + +0.5 668,670 - -1.9 668,689 + -1.4 668,690 - -0.1 668,811 + Sama_0543 0.17 -0.6 668,811 + Sama_0543 0.17 +1.0 668,812 - Sama_0543 0.17 -1.4 668,812 - Sama_0543 0.17 -0.6 668,975 + Sama_0543 0.42 -1.1 668,975 + Sama_0543 0.42 -0.6 668,975 + Sama_0543 0.42 +0.3 668,975 + Sama_0543 0.42 -1.2 668,976 - Sama_0543 0.42 -0.4 668,976 - Sama_0543 0.42 -0.0 668,976 - Sama_0543 0.42 -0.3 668,976 - Sama_0543 0.42 +0.1 669,005 + Sama_0543 0.46 +2.1 669,006 - Sama_0543 0.46 -0.3 669,006 - Sama_0543 0.46 +0.4 669,109 + Sama_0543 0.62 +0.2 669,109 + Sama_0543 0.62 +0.3 669,109 + Sama_0543 0.62 -0.6 669,109 + Sama_0543 0.62 +0.6 669,110 - Sama_0543 0.62 -0.9 669,117 + Sama_0543 0.63 -0.9 669,118 - Sama_0543 0.63 +0.1 669,131 + Sama_0543 0.65 -0.8 669,131 + Sama_0543 0.65 -0.2 669,162 + Sama_0543 0.70 -0.4 669,162 + Sama_0543 0.70 +0.4 669,162 + Sama_0543 0.70 -0.0 669,245 - Sama_0543 0.83 -0.2 669,257 + Sama_0543 0.85 +0.2 669,257 + Sama_0543 0.85 -0.4 669,337 + -0.3 669,337 + -0.1 669,337 + -0.3 669,337 + -1.7 669,351 + -0.4 669,351 + +0.3 669,352 - +0.4 669,355 + -0.4 669,355 + -0.4 669,355 + +0.2 669,364 + +0.5 669,364 + +0.5 669,376 + +0.3 669,376 + +0.4 669,376 + -1.0 669,376 + -1.6 669,377 - -1.9 669,377 - +0.4 669,377 - +0.1 669,485 - -0.7 669,485 - -1.4 669,493 + +0.3 669,494 - -0.3 669,494 - -0.9 669,498 + -1.3 669,498 + -0.0 669,498 + -0.2 669,499 - -0.4 669,499 - -1.1 669,568 + +0.4 669,568 + -0.1 669,568 + -0.6 669,568 + +0.8 669,568 + +0.3 669,568 + -1.3 669,568 + -0.4 669,568 + -2.2 669,568 + +1.1 669,568 + -1.7 669,568 + -0.6 669,568 + +2.3 669,568 + -1.2 669,568 + -0.7 669,568 + -1.2 669,568 + +0.1 669,569 - -1.9 669,569 - -2.6 669,569 - -0.3 669,569 - -0.6 669,569 - -0.2 669,569 - -0.7 669,569 - -2.1 669,569 - -1.3 669,569 - -3.0 669,569 - -1.4 669,569 - -0.8 669,569 - -1.0 669,569 - -0.4 669,569 - -2.8 669,569 - -0.9 669,577 + -0.5 669,577 + -3.1 669,578 - -0.4 669,613 + Sama_0544 0.12 -0.3 669,629 + Sama_0544 0.13 -1.2 669,629 + Sama_0544 0.13 -1.2 669,629 + Sama_0544 0.13 -0.0 669,629 + Sama_0544 0.13 -2.4 669,630 - Sama_0544 0.14 -1.8 669,630 - Sama_0544 0.14 -1.5
Or see this region's nucleotide sequence