Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3863

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3862 and Dshi_3863 are separated by 54 nucleotidesDshi_3863 and Dshi_3864 are separated by 16 nucleotidesDshi_3864 and Dshi_3865 are separated by 122 nucleotides Dshi_3862: Dshi_3862 - hypothetical protein (RefSeq), at 70,763 to 72,700 _3862 Dshi_3863: Dshi_3863 - hypothetical protein (RefSeq), at 72,755 to 73,885 _3863 Dshi_3864: Dshi_3864 - sulfotransferase (RefSeq), at 73,902 to 74,681 _3864 Dshi_3865: Dshi_3865 - hypothetical protein (RefSeq), at 74,804 to 75,793 _3865 Position (kb) 72 73 74Strain fitness (log2 ratio) -1 0 1 2 3at 71.772 kb on + strand, within Dshi_3862at 71.792 kb on + strand, within Dshi_3862at 71.799 kb on + strand, within Dshi_3862at 71.800 kb on - strand, within Dshi_3862at 71.820 kb on + strand, within Dshi_3862at 71.827 kb on - strand, within Dshi_3862at 71.828 kb on - strand, within Dshi_3862at 71.879 kb on + strand, within Dshi_3862at 71.879 kb on + strand, within Dshi_3862at 71.910 kb on - strand, within Dshi_3862at 71.914 kb on - strand, within Dshi_3862at 71.967 kb on + strand, within Dshi_3862at 71.968 kb on - strand, within Dshi_3862at 71.974 kb on + strand, within Dshi_3862at 71.975 kb on - strand, within Dshi_3862at 72.005 kb on - strand, within Dshi_3862at 72.063 kb on - strand, within Dshi_3862at 72.070 kb on + strand, within Dshi_3862at 72.078 kb on + strand, within Dshi_3862at 72.078 kb on + strand, within Dshi_3862at 72.086 kb on - strand, within Dshi_3862at 72.094 kb on - strand, within Dshi_3862at 72.122 kb on + strand, within Dshi_3862at 72.136 kb on + strand, within Dshi_3862at 72.168 kb on - strand, within Dshi_3862at 72.168 kb on - strand, within Dshi_3862at 72.207 kb on - strand, within Dshi_3862at 72.207 kb on - strand, within Dshi_3862at 72.345 kb on + strand, within Dshi_3862at 72.395 kb on + strand, within Dshi_3862at 72.404 kb on - strand, within Dshi_3862at 72.404 kb on - strand, within Dshi_3862at 72.423 kb on - strand, within Dshi_3862at 72.485 kb on + strand, within Dshi_3862at 72.620 kb on + strandat 72.663 kb on + strandat 72.754 kb on + strandat 72.754 kb on + strandat 72.762 kb on - strandat 72.766 kb on + strandat 72.874 kb on + strand, within Dshi_3863at 72.885 kb on + strand, within Dshi_3863at 72.893 kb on - strand, within Dshi_3863at 72.907 kb on + strand, within Dshi_3863at 72.952 kb on - strand, within Dshi_3863at 72.979 kb on + strand, within Dshi_3863at 72.985 kb on + strand, within Dshi_3863at 72.987 kb on - strand, within Dshi_3863at 72.998 kb on - strand, within Dshi_3863at 73.014 kb on - strand, within Dshi_3863at 73.023 kb on + strand, within Dshi_3863at 73.028 kb on + strand, within Dshi_3863at 73.039 kb on + strand, within Dshi_3863at 73.093 kb on - strand, within Dshi_3863at 73.166 kb on + strand, within Dshi_3863at 73.207 kb on - strand, within Dshi_3863at 73.228 kb on - strand, within Dshi_3863at 73.249 kb on - strand, within Dshi_3863at 73.249 kb on - strand, within Dshi_3863at 73.249 kb on - strand, within Dshi_3863at 73.256 kb on - strand, within Dshi_3863at 73.299 kb on + strand, within Dshi_3863at 73.472 kb on - strand, within Dshi_3863at 73.491 kb on + strand, within Dshi_3863at 73.512 kb on + strand, within Dshi_3863at 73.616 kb on - strand, within Dshi_3863at 73.632 kb on + strand, within Dshi_3863at 73.640 kb on - strand, within Dshi_3863at 73.703 kb on - strand, within Dshi_3863at 73.748 kb on - strand, within Dshi_3863at 73.772 kb on + strand, within Dshi_3863at 73.792 kb on + strandat 73.793 kb on + strandat 73.857 kb on - strandat 73.937 kb on + strandat 74.006 kb on + strand, within Dshi_3864at 74.079 kb on + strand, within Dshi_3864at 74.122 kb on - strand, within Dshi_3864at 74.138 kb on - strand, within Dshi_3864at 74.262 kb on - strand, within Dshi_3864at 74.471 kb on + strand, within Dshi_3864at 74.538 kb on - strand, within Dshi_3864at 74.549 kb on + strand, within Dshi_3864at 74.549 kb on + strand, within Dshi_3864at 74.574 kb on + strand, within Dshi_3864at 74.576 kb on + strand, within Dshi_3864at 74.625 kb on - strandat 74.685 kb on + strandat 74.693 kb on - strandat 74.694 kb on - strandat 74.694 kb on - strandat 74.793 kb on - strandat 74.862 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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71,772 + Dshi_3862 0.52 -0.2
71,792 + Dshi_3862 0.53 +0.8
71,799 + Dshi_3862 0.53 +0.7
71,800 - Dshi_3862 0.54 +0.6
71,820 + Dshi_3862 0.55 -0.1
71,827 - Dshi_3862 0.55 +1.2
71,828 - Dshi_3862 0.55 +0.8
71,879 + Dshi_3862 0.58 +0.4
71,879 + Dshi_3862 0.58 +1.1
71,910 - Dshi_3862 0.59 +1.2
71,914 - Dshi_3862 0.59 +1.5
71,967 + Dshi_3862 0.62 +0.5
71,968 - Dshi_3862 0.62 +0.5
71,974 + Dshi_3862 0.62 +1.2
71,975 - Dshi_3862 0.63 +0.7
72,005 - Dshi_3862 0.64 +0.7
72,063 - Dshi_3862 0.67 +1.0
72,070 + Dshi_3862 0.67 +1.3
72,078 + Dshi_3862 0.68 +0.6
72,078 + Dshi_3862 0.68 +0.6
72,086 - Dshi_3862 0.68 +0.6
72,094 - Dshi_3862 0.69 +1.3
72,122 + Dshi_3862 0.70 +1.2
72,136 + Dshi_3862 0.71 +2.2
72,168 - Dshi_3862 0.72 +0.6
72,168 - Dshi_3862 0.72 +1.0
72,207 - Dshi_3862 0.75 +0.4
72,207 - Dshi_3862 0.75 +1.0
72,345 + Dshi_3862 0.82 +0.9
72,395 + Dshi_3862 0.84 +0.5
72,404 - Dshi_3862 0.85 +0.8
72,404 - Dshi_3862 0.85 -0.5
72,423 - Dshi_3862 0.86 +1.2
72,485 + Dshi_3862 0.89 +0.2
72,620 + +1.3
72,663 + +1.1
72,754 + -0.9
72,754 + -0.3
72,762 - -0.5
72,766 + +1.1
72,874 + Dshi_3863 0.11 +0.7
72,885 + Dshi_3863 0.11 +1.2
72,893 - Dshi_3863 0.12 +0.9
72,907 + Dshi_3863 0.13 +0.6
72,952 - Dshi_3863 0.17 +0.9
72,979 + Dshi_3863 0.20 -0.4
72,985 + Dshi_3863 0.20 +1.2
72,987 - Dshi_3863 0.21 +1.2
72,998 - Dshi_3863 0.21 +0.8
73,014 - Dshi_3863 0.23 +1.4
73,023 + Dshi_3863 0.24 +0.9
73,028 + Dshi_3863 0.24 +0.4
73,039 + Dshi_3863 0.25 +1.6
73,093 - Dshi_3863 0.30 +1.8
73,166 + Dshi_3863 0.36 +2.0
73,207 - Dshi_3863 0.40 +0.9
73,228 - Dshi_3863 0.42 +0.8
73,249 - Dshi_3863 0.44 +0.6
73,249 - Dshi_3863 0.44 +1.3
73,249 - Dshi_3863 0.44 +1.6
73,256 - Dshi_3863 0.44 +1.8
73,299 + Dshi_3863 0.48 +0.8
73,472 - Dshi_3863 0.63 +1.4
73,491 + Dshi_3863 0.65 +1.5
73,512 + Dshi_3863 0.67 +1.5
73,616 - Dshi_3863 0.76 +0.6
73,632 + Dshi_3863 0.78 +0.9
73,640 - Dshi_3863 0.78 +1.5
73,703 - Dshi_3863 0.84 +0.7
73,748 - Dshi_3863 0.88 +2.1
73,772 + Dshi_3863 0.90 +0.3
73,792 + +1.2
73,793 + +1.5
73,857 - +0.9
73,937 + +2.3
74,006 + Dshi_3864 0.13 +1.7
74,079 + Dshi_3864 0.23 +2.8
74,122 - Dshi_3864 0.28 +2.3
74,138 - Dshi_3864 0.30 +1.8
74,262 - Dshi_3864 0.46 +1.7
74,471 + Dshi_3864 0.73 +2.2
74,538 - Dshi_3864 0.82 +1.9
74,549 + Dshi_3864 0.83 +2.0
74,549 + Dshi_3864 0.83 +2.4
74,574 + Dshi_3864 0.86 +2.3
74,576 + Dshi_3864 0.86 +2.0
74,625 - +2.0
74,685 + +0.2
74,693 - -0.1
74,694 - +1.3
74,694 - +1.5
74,793 - +0.8
74,862 + -0.1

Or see this region's nucleotide sequence