Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3154

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3153 and Dshi_3154 are separated by 22 nucleotidesDshi_3154 and Dshi_3155 overlap by 4 nucleotides Dshi_3153: Dshi_3153 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 3,318,825 to 3,319,859 _3153 Dshi_3154: Dshi_3154 - TRAP transporter, transmembrane protein, putative (RefSeq), at 3,319,882 to 3,320,430 _3154 Dshi_3155: Dshi_3155 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 3,320,427 to 3,321,716 _3155 Position (kb) 3319 3320 3321Strain fitness (log2 ratio) -1 0 1at 3318.908 kb on - strandat 3318.918 kb on - strandat 3318.929 kb on - strand, within Dshi_3153at 3318.996 kb on + strand, within Dshi_3153at 3319.047 kb on - strand, within Dshi_3153at 3319.070 kb on - strand, within Dshi_3153at 3319.070 kb on - strand, within Dshi_3153at 3319.210 kb on - strand, within Dshi_3153at 3319.273 kb on + strand, within Dshi_3153at 3319.473 kb on - strand, within Dshi_3153at 3319.492 kb on - strand, within Dshi_3153at 3319.622 kb on - strand, within Dshi_3153at 3319.643 kb on - strand, within Dshi_3153at 3319.785 kb on - strandat 3319.868 kb on + strandat 3319.888 kb on - strandat 3320.553 kb on - strandat 3320.565 kb on + strand, within Dshi_3155at 3320.572 kb on - strand, within Dshi_3155at 3320.665 kb on - strand, within Dshi_3155at 3320.714 kb on - strand, within Dshi_3155at 3320.714 kb on - strand, within Dshi_3155at 3320.754 kb on - strand, within Dshi_3155at 3321.157 kb on - strand, within Dshi_3155at 3321.233 kb on + strand, within Dshi_3155at 3321.347 kb on - strand, within Dshi_3155at 3321.357 kb on + strand, within Dshi_3155

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,318,908 - +1.1
3,318,918 - -0.5
3,318,929 - Dshi_3153 0.10 +0.2
3,318,996 + Dshi_3153 0.17 -0.4
3,319,047 - Dshi_3153 0.21 -0.8
3,319,070 - Dshi_3153 0.24 -0.8
3,319,070 - Dshi_3153 0.24 -0.8
3,319,210 - Dshi_3153 0.37 -0.3
3,319,273 + Dshi_3153 0.43 -0.3
3,319,473 - Dshi_3153 0.63 -0.5
3,319,492 - Dshi_3153 0.64 +0.7
3,319,622 - Dshi_3153 0.77 -1.2
3,319,643 - Dshi_3153 0.79 -0.2
3,319,785 - +0.4
3,319,868 + +0.1
3,319,888 - -0.1
3,320,553 - -0.2
3,320,565 + Dshi_3155 0.11 -1.3
3,320,572 - Dshi_3155 0.11 +0.1
3,320,665 - Dshi_3155 0.18 -0.3
3,320,714 - Dshi_3155 0.22 +1.7
3,320,714 - Dshi_3155 0.22 +0.2
3,320,754 - Dshi_3155 0.25 -0.6
3,321,157 - Dshi_3155 0.57 -0.1
3,321,233 + Dshi_3155 0.62 -1.5
3,321,347 - Dshi_3155 0.71 +0.2
3,321,357 + Dshi_3155 0.72 +0.1

Or see this region's nucleotide sequence