Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2783

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2782 and Dshi_2783 are separated by 472 nucleotidesDshi_2783 and Dshi_2784 are separated by 53 nucleotidesDshi_2784 and Dshi_2785 are separated by 33 nucleotides Dshi_2782: Dshi_2782 - PAS fold-4 domain protein (RefSeq), at 2,942,514 to 2,943,002 _2782 Dshi_2783: Dshi_2783 - N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD (RefSeq), at 2,943,475 to 2,944,113 _2783 Dshi_2784: Dshi_2784 - hypothetical protein (RefSeq), at 2,944,167 to 2,944,769 _2784 Dshi_2785: Dshi_2785 - glutamyl-tRNA(Gln) amidotransferase, A subunit (RefSeq), at 2,944,803 to 2,946,290 _2785 Position (kb) 2943 2944 2945Strain fitness (log2 ratio) -1 0 1at 2942.753 kb on + strand, within Dshi_2782at 2943.566 kb on - strand, within Dshi_2783at 2943.577 kb on - strand, within Dshi_2783at 2943.627 kb on + strand, within Dshi_2783at 2943.881 kb on - strand, within Dshi_2783at 2944.022 kb on + strand, within Dshi_2783at 2944.077 kb on + strandat 2944.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,942,753 + Dshi_2782 0.49 -0.6
2,943,566 - Dshi_2783 0.14 +0.6
2,943,577 - Dshi_2783 0.16 +1.0
2,943,627 + Dshi_2783 0.24 -0.9
2,943,881 - Dshi_2783 0.64 +0.4
2,944,022 + Dshi_2783 0.86 +0.1
2,944,077 + +0.6
2,944,118 - +1.1

Or see this region's nucleotide sequence