Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2767 and Dshi_2768 overlap by 4 nucleotides Dshi_2768 and Dshi_2769 are separated by 42 nucleotides Dshi_2769 and Dshi_2770 overlap by 4 nucleotides
Dshi_2767: Dshi_2767 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,929,331 to 2,930,296
_2767
Dshi_2768: Dshi_2768 - hypothetical protein (RefSeq), at 2,930,293 to 2,931,126
_2768
Dshi_2769: Dshi_2769 - 5-formyltetrahydrofolate cyclo-ligase (RefSeq), at 2,931,169 to 2,931,762
_2769
Dshi_2770: Dshi_2770 - magnesium transporter (RefSeq), at 2,931,759 to 2,933,141
_2770
Position (kb)
2931
2932 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2930.437 kb on + strand, within Dshi_2768 at 2930.687 kb on - strand, within Dshi_2768 at 2930.696 kb on - strand, within Dshi_2768 at 2930.792 kb on - strand, within Dshi_2768 at 2930.824 kb on - strand, within Dshi_2768 at 2930.831 kb on + strand, within Dshi_2768 at 2931.117 kb on + strand at 2931.120 kb on - strand at 2931.125 kb on - strand at 2931.137 kb on - strand at 2931.143 kb on - strand at 2931.143 kb on - strand at 2931.143 kb on - strand at 2931.164 kb on - strand at 2931.174 kb on + strand at 2931.193 kb on - strand at 2931.262 kb on + strand, within Dshi_2769 at 2931.270 kb on + strand, within Dshi_2769 at 2931.275 kb on + strand, within Dshi_2769 at 2931.280 kb on + strand, within Dshi_2769 at 2931.311 kb on - strand, within Dshi_2769 at 2931.384 kb on + strand, within Dshi_2769 at 2931.704 kb on - strand at 2931.742 kb on + strand at 2932.732 kb on + strand, within Dshi_2770
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,930,437 + Dshi_2768 0.17 +0.6 2,930,687 - Dshi_2768 0.47 -0.4 2,930,696 - Dshi_2768 0.48 +0.1 2,930,792 - Dshi_2768 0.60 -1.7 2,930,824 - Dshi_2768 0.64 +0.2 2,930,831 + Dshi_2768 0.65 -1.4 2,931,117 + -1.1 2,931,120 - -0.5 2,931,125 - -3.1 2,931,137 - +0.3 2,931,143 - +0.9 2,931,143 - -0.1 2,931,143 - -0.7 2,931,164 - -0.0 2,931,174 + -0.8 2,931,193 - +1.1 2,931,262 + Dshi_2769 0.16 -2.1 2,931,270 + Dshi_2769 0.17 -1.7 2,931,275 + Dshi_2769 0.18 +1.0 2,931,280 + Dshi_2769 0.19 -1.8 2,931,311 - Dshi_2769 0.24 -1.2 2,931,384 + Dshi_2769 0.36 -0.8 2,931,704 - -0.8 2,931,742 + -0.7 2,932,732 + Dshi_2770 0.70 +0.1
Or see this region's nucleotide sequence