Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2682 and Dshi_2683 are separated by 192 nucleotides Dshi_2683 and Dshi_2684 are separated by 81 nucleotides Dshi_2684 and Dshi_2685 are separated by 394 nucleotides
Dshi_2682: Dshi_2682 - glycine cleavage system T protein (RefSeq), at 2,842,546 to 2,843,631
_2682
Dshi_2683: Dshi_2683 - Aldose 1-epimerase (RefSeq), at 2,843,824 to 2,844,828
_2683
Dshi_2684: Dshi_2684 - Hydroxyisourate hydrolase (RefSeq), at 2,844,910 to 2,845,275
_2684
Dshi_2685: Dshi_2685 - Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (RefSeq), at 2,845,670 to 2,846,659
_2685
Position (kb)
2843
2844
2845 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2842.847 kb on + strand, within Dshi_2682 at 2843.075 kb on + strand, within Dshi_2682 at 2843.359 kb on - strand, within Dshi_2682 at 2843.533 kb on - strand at 2843.799 kb on + strand at 2843.922 kb on - strand at 2843.942 kb on - strand, within Dshi_2683 at 2844.020 kb on + strand, within Dshi_2683 at 2844.195 kb on - strand, within Dshi_2683 at 2844.196 kb on - strand, within Dshi_2683 at 2844.280 kb on + strand, within Dshi_2683 at 2844.280 kb on + strand, within Dshi_2683 at 2844.285 kb on + strand, within Dshi_2683 at 2844.300 kb on - strand, within Dshi_2683 at 2844.407 kb on + strand, within Dshi_2683 at 2844.407 kb on + strand, within Dshi_2683 at 2844.430 kb on - strand, within Dshi_2683 at 2844.556 kb on + strand, within Dshi_2683 at 2844.786 kb on - strand at 2844.882 kb on + strand at 2844.901 kb on + strand at 2845.262 kb on - strand at 2845.339 kb on - strand at 2845.555 kb on - strand at 2845.586 kb on - strand at 2845.666 kb on - strand at 2845.808 kb on - strand, within Dshi_2685 at 2845.818 kb on - strand, within Dshi_2685 at 2845.827 kb on - strand, within Dshi_2685
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,842,847 + Dshi_2682 0.28 -0.2 2,843,075 + Dshi_2682 0.49 -0.2 2,843,359 - Dshi_2682 0.75 +0.2 2,843,533 - +0.1 2,843,799 + +0.6 2,843,922 - +0.9 2,843,942 - Dshi_2683 0.12 +0.6 2,844,020 + Dshi_2683 0.20 -1.2 2,844,195 - Dshi_2683 0.37 +0.4 2,844,196 - Dshi_2683 0.37 -1.0 2,844,280 + Dshi_2683 0.45 -1.2 2,844,280 + Dshi_2683 0.45 -0.5 2,844,285 + Dshi_2683 0.46 -0.2 2,844,300 - Dshi_2683 0.47 -0.8 2,844,407 + Dshi_2683 0.58 -0.9 2,844,407 + Dshi_2683 0.58 -1.0 2,844,430 - Dshi_2683 0.60 +0.1 2,844,556 + Dshi_2683 0.73 -1.9 2,844,786 - -0.3 2,844,882 + -0.9 2,844,901 + +0.1 2,845,262 - +2.5 2,845,339 - +0.5 2,845,555 - -0.5 2,845,586 - -0.3 2,845,666 - +0.1 2,845,808 - Dshi_2685 0.14 -0.9 2,845,818 - Dshi_2685 0.15 -0.8 2,845,827 - Dshi_2685 0.16 -0.7
Or see this region's nucleotide sequence