Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2472 and Dshi_2473 overlap by 4 nucleotides Dshi_2473 and Dshi_2474 overlap by 4 nucleotides Dshi_2474 and Dshi_2475 are separated by 4 nucleotides
Dshi_2472: Dshi_2472 - Peptidoglycan glycosyltransferase (RefSeq), at 2,624,468 to 2,626,261
_2472
Dshi_2473: Dshi_2473 - putative FtsL (RefSeq), at 2,626,258 to 2,626,614
_2473
Dshi_2474: Dshi_2474 - S-adenosyl-methyltransferase MraW (RefSeq), at 2,626,611 to 2,627,612
_2474
Dshi_2475: Dshi_2475 - protein of unknown function UPF0040 (RefSeq), at 2,627,617 to 2,628,129
_2475
Position (kb)
2626
2627
2628 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2626.630 kb on + strand at 2626.655 kb on - strand at 2626.772 kb on + strand, within Dshi_2474 at 2627.037 kb on - strand, within Dshi_2474 at 2627.210 kb on - strand, within Dshi_2474 at 2627.526 kb on - strand at 2627.853 kb on - strand, within Dshi_2475 at 2627.950 kb on + strand, within Dshi_2475 at 2627.957 kb on - strand, within Dshi_2475 at 2628.008 kb on - strand, within Dshi_2475 at 2628.254 kb on - strand at 2628.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,626,630 + -0.7 2,626,655 - -0.2 2,626,772 + Dshi_2474 0.16 -0.7 2,627,037 - Dshi_2474 0.43 -2.0 2,627,210 - Dshi_2474 0.60 -1.7 2,627,526 - -0.2 2,627,853 - Dshi_2475 0.46 -3.4 2,627,950 + Dshi_2475 0.65 -0.8 2,627,957 - Dshi_2475 0.66 +0.2 2,628,008 - Dshi_2475 0.76 -0.9 2,628,254 - -0.2 2,628,541 - +1.4
Or see this region's nucleotide sequence