Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2380

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2378 and Dshi_2379 overlap by 4 nucleotidesDshi_2379 and Dshi_2380 overlap by 4 nucleotidesDshi_2380 and Dshi_R0044 are separated by 88 nucleotidesDshi_R0044 and Dshi_2381 are separated by 190 nucleotides Dshi_2378: Dshi_2378 - alanine racemase (RefSeq), at 2,512,525 to 2,513,574 _2378 Dshi_2379: Dshi_2379 - protein of unknown function DUF140 (RefSeq), at 2,513,571 to 2,514,347 _2379 Dshi_2380: Dshi_2380 - ABC transporter related (RefSeq), at 2,514,344 to 2,515,117 _2380 Dshi_R0044: Dshi_R0044 - tRNA-Leu (RefSeq), at 2,515,206 to 2,515,292 _R0044 Dshi_2381: Dshi_2381 - lipoate-protein ligase B (RefSeq), at 2,515,483 to 2,516,145 _2381 Position (kb) 2514 2515 2516Strain fitness (log2 ratio) -3 -2 -1 0 1at 2513.365 kb on + strand, within Dshi_2378at 2513.662 kb on + strand, within Dshi_2379at 2513.687 kb on - strand, within Dshi_2379at 2513.733 kb on - strand, within Dshi_2379at 2513.871 kb on + strand, within Dshi_2379at 2513.913 kb on - strand, within Dshi_2379at 2514.001 kb on + strand, within Dshi_2379at 2514.041 kb on + strand, within Dshi_2379at 2514.233 kb on - strand, within Dshi_2379at 2514.251 kb on + strand, within Dshi_2379at 2514.251 kb on + strand, within Dshi_2379at 2514.251 kb on + strand, within Dshi_2379at 2514.571 kb on + strand, within Dshi_2380at 2514.740 kb on + strand, within Dshi_2380at 2514.784 kb on - strand, within Dshi_2380at 2514.841 kb on - strand, within Dshi_2380at 2514.867 kb on + strand, within Dshi_2380at 2514.907 kb on - strand, within Dshi_2380at 2515.459 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,513,365 + Dshi_2378 0.80 -3.2
2,513,662 + Dshi_2379 0.12 -0.0
2,513,687 - Dshi_2379 0.15 -0.8
2,513,733 - Dshi_2379 0.21 +0.4
2,513,871 + Dshi_2379 0.39 +1.3
2,513,913 - Dshi_2379 0.44 -0.9
2,514,001 + Dshi_2379 0.55 +0.1
2,514,041 + Dshi_2379 0.60 +0.6
2,514,233 - Dshi_2379 0.85 +1.0
2,514,251 + Dshi_2379 0.88 -0.4
2,514,251 + Dshi_2379 0.88 -1.7
2,514,251 + Dshi_2379 0.88 -0.5
2,514,571 + Dshi_2380 0.29 -1.5
2,514,740 + Dshi_2380 0.51 -0.6
2,514,784 - Dshi_2380 0.57 -2.3
2,514,841 - Dshi_2380 0.64 +1.1
2,514,867 + Dshi_2380 0.68 +0.9
2,514,907 - Dshi_2380 0.73 -1.1
2,515,459 + +0.6

Or see this region's nucleotide sequence