Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2207

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2206 and Dshi_2207 are separated by 88 nucleotidesDshi_2207 and Dshi_2208 are separated by 283 nucleotides Dshi_2206: Dshi_2206 - lysyl-tRNA synthetase (RefSeq), at 2,331,348 to 2,333,006 _2206 Dshi_2207: Dshi_2207 - hypothetical protein (RefSeq), at 2,333,095 to 2,333,496 _2207 Dshi_2208: Dshi_2208 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq), at 2,333,780 to 2,335,267 _2208 Position (kb) 2333 2334Strain fitness (log2 ratio) -1 0 1at 2333.146 kb on - strand, within Dshi_2207at 2333.151 kb on + strand, within Dshi_2207at 2333.392 kb on + strand, within Dshi_2207at 2333.559 kb on + strandat 2333.632 kb on + strandat 2333.699 kb on + strandat 2333.707 kb on - strandat 2333.748 kb on - strandat 2333.770 kb on - strandat 2333.953 kb on + strand, within Dshi_2208at 2334.024 kb on - strand, within Dshi_2208at 2334.062 kb on + strand, within Dshi_2208

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,333,146 - Dshi_2207 0.13 -0.0
2,333,151 + Dshi_2207 0.14 -1.4
2,333,392 + Dshi_2207 0.74 -1.5
2,333,559 + +0.2
2,333,632 + -0.1
2,333,699 + -0.7
2,333,707 - +0.4
2,333,748 - +0.0
2,333,770 - +0.6
2,333,953 + Dshi_2208 0.12 -0.9
2,334,024 - Dshi_2208 0.16 +1.2
2,334,062 + Dshi_2208 0.19 -0.2

Or see this region's nucleotide sequence