Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1799

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1797 and Dshi_1798 are separated by 183 nucleotidesDshi_1798 and Dshi_1799 overlap by 4 nucleotidesDshi_1799 and Dshi_1800 overlap by 4 nucleotidesDshi_1800 and Dshi_1801 overlap by 4 nucleotides Dshi_1797: Dshi_1797 - protein of unknown function DUF610, YibQ (RefSeq), at 1,868,767 to 1,870,593 _1797 Dshi_1798: Dshi_1798 - glutamine amidotransferase of anthranilate synthase (RefSeq), at 1,870,777 to 1,871,382 _1798 Dshi_1799: Dshi_1799 - anthranilate phosphoribosyltransferase (RefSeq), at 1,871,379 to 1,872,398 _1799 Dshi_1800: Dshi_1800 - Indole-3-glycerol-phosphate synthase (RefSeq), at 1,872,395 to 1,873,210 _1800 Dshi_1801: Dshi_1801 - molybdenum cofactor biosynthesis protein C (RefSeq), at 1,873,207 to 1,873,683 _1801 Position (kb) 1871 1872 1873Strain fitness (log2 ratio) -1 0 1at 1870.559 kb on + strandat 1870.567 kb on - strandat 1870.576 kb on + strandat 1870.582 kb on + strandat 1870.599 kb on + strandat 1870.720 kb on + strandat 1870.720 kb on + strandat 1870.728 kb on - strandat 1873.192 kb on + strandat 1873.269 kb on + strand, within Dshi_1801at 1873.335 kb on + strand, within Dshi_1801

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,870,559 + +0.5
1,870,567 - +0.1
1,870,576 + -1.3
1,870,582 + -0.8
1,870,599 + -1.5
1,870,720 + -0.4
1,870,720 + +1.1
1,870,728 - +0.5
1,873,192 + +0.7
1,873,269 + Dshi_1801 0.13 +0.9
1,873,335 + Dshi_1801 0.27 +1.0

Or see this region's nucleotide sequence