Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1290 and Dshi_1291 are separated by 232 nucleotides Dshi_1291 and Dshi_1292 overlap by 4 nucleotides Dshi_1292 and Dshi_1293 are separated by 3 nucleotides
Dshi_1290: Dshi_1290 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,343,361 to 1,344,371
_1290
Dshi_1291: Dshi_1291 - DNA alkylation repair enzyme (RefSeq), at 1,344,604 to 1,345,305
_1291
Dshi_1292: Dshi_1292 - pyridoxamine 5'-phosphate oxidase-related FMN-binding (RefSeq), at 1,345,302 to 1,345,850
_1292
Dshi_1293: Dshi_1293 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing (RefSeq), at 1,345,854 to 1,347,674
_1293
Position (kb)
1345
1346 Strain fitness (log2 ratio)
-1
0
1 at 1344.359 kb on - strand at 1344.424 kb on - strand at 1344.536 kb on + strand at 1344.851 kb on - strand, within Dshi_1291 at 1344.854 kb on - strand, within Dshi_1291 at 1344.887 kb on + strand, within Dshi_1291 at 1344.895 kb on - strand, within Dshi_1291 at 1344.915 kb on - strand, within Dshi_1291 at 1344.981 kb on - strand, within Dshi_1291 at 1345.412 kb on - strand, within Dshi_1292 at 1345.524 kb on - strand, within Dshi_1292 at 1345.543 kb on - strand, within Dshi_1292
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,344,359 - +0.6 1,344,424 - -0.6 1,344,536 + +0.7 1,344,851 - Dshi_1291 0.35 -0.4 1,344,854 - Dshi_1291 0.36 -0.2 1,344,887 + Dshi_1291 0.40 -0.8 1,344,895 - Dshi_1291 0.41 -0.6 1,344,915 - Dshi_1291 0.44 -0.3 1,344,981 - Dshi_1291 0.54 -1.1 1,345,412 - Dshi_1292 0.20 -1.4 1,345,524 - Dshi_1292 0.40 -1.1 1,345,543 - Dshi_1292 0.44 +0.2
Or see this region's nucleotide sequence