Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1139 and Dshi_1140 are separated by 260 nucleotides Dshi_1140 and Dshi_1141 are separated by 20 nucleotides
Dshi_1139: Dshi_1139 - peptidase U62 modulator of DNA gyrase (RefSeq), at 1,166,474 to 1,167,895
_1139
Dshi_1140: Dshi_1140 - Cytochrome c oxidase subunit II (RefSeq), at 1,168,156 to 1,168,968
_1140
Dshi_1141: Dshi_1141 - protoheme IX farnesyltransferase (RefSeq), at 1,168,989 to 1,169,975
_1141
Position (kb)
1168
1169 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1167.218 kb on - strand, within Dshi_1139 at 1167.393 kb on - strand, within Dshi_1139 at 1167.399 kb on - strand, within Dshi_1139 at 1167.714 kb on - strand, within Dshi_1139 at 1167.746 kb on - strand, within Dshi_1139 at 1167.830 kb on - strand at 1167.934 kb on + strand at 1167.941 kb on + strand at 1167.949 kb on + strand at 1168.149 kb on - strand at 1168.467 kb on + strand, within Dshi_1140 at 1168.467 kb on + strand, within Dshi_1140 at 1168.536 kb on + strand, within Dshi_1140 at 1168.690 kb on - strand, within Dshi_1140 at 1168.730 kb on - strand, within Dshi_1140 at 1169.040 kb on + strand at 1169.150 kb on + strand, within Dshi_1141 at 1169.361 kb on + strand, within Dshi_1141 at 1169.581 kb on - strand, within Dshi_1141 at 1169.647 kb on + strand, within Dshi_1141 at 1169.657 kb on + strand, within Dshi_1141 at 1169.843 kb on + strand, within Dshi_1141 at 1169.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,167,218 - Dshi_1139 0.52 -1.4 1,167,393 - Dshi_1139 0.65 -0.7 1,167,399 - Dshi_1139 0.65 -0.1 1,167,714 - Dshi_1139 0.87 -1.0 1,167,746 - Dshi_1139 0.89 -1.0 1,167,830 - +0.0 1,167,934 + +0.2 1,167,941 + +1.7 1,167,949 + +0.7 1,168,149 - -2.8 1,168,467 + Dshi_1140 0.38 -0.6 1,168,467 + Dshi_1140 0.38 -1.3 1,168,536 + Dshi_1140 0.47 -2.5 1,168,690 - Dshi_1140 0.66 -1.0 1,168,730 - Dshi_1140 0.71 -2.8 1,169,040 + -2.9 1,169,150 + Dshi_1141 0.16 -1.6 1,169,361 + Dshi_1141 0.38 -1.7 1,169,581 - Dshi_1141 0.60 +0.0 1,169,647 + Dshi_1141 0.67 -2.3 1,169,657 + Dshi_1141 0.68 -0.7 1,169,843 + Dshi_1141 0.87 -2.6 1,169,909 + -1.6
Or see this region's nucleotide sequence