Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0786 and Dshi_0787 are separated by 49 nucleotides Dshi_0787 and Dshi_0788 are separated by 96 nucleotides Dshi_0788 and Dshi_0789 are separated by 3 nucleotides
Dshi_0786: Dshi_0786 - transcriptional regulator, CarD family (RefSeq), at 791,654 to 792,166
_0786
Dshi_0787: Dshi_0787 - cobalamin-5-phosphate synthase CobS (RefSeq), at 792,216 to 792,992
_0787
Dshi_0788: Dshi_0788 - Nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (RefSeq), at 793,089 to 794,126
_0788
Dshi_0789: Dshi_0789 - potassium efflux system protein (RefSeq), at 794,130 to 796,142
_0789
Position (kb) 793
794
795 Strain fitness (log2 ratio) -1
0
1
2 at 794.122 kb on + strand at 794.372 kb on - strand, within Dshi_0789 at 794.487 kb on - strand, within Dshi_0789 at 794.576 kb on + strand, within Dshi_0789 at 794.581 kb on + strand, within Dshi_0789 at 794.637 kb on - strand, within Dshi_0789 at 794.646 kb on - strand, within Dshi_0789 at 794.647 kb on - strand, within Dshi_0789 at 794.656 kb on - strand, within Dshi_0789 at 794.962 kb on - strand, within Dshi_0789 at 794.977 kb on - strand, within Dshi_0789 at 794.987 kb on - strand, within Dshi_0789 at 795.059 kb on + strand, within Dshi_0789 at 795.085 kb on + strand, within Dshi_0789 at 795.097 kb on + strand, within Dshi_0789 at 795.101 kb on + strand, within Dshi_0789
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 794,122 + +0.5 794,372 - Dshi_0789 0.12 +0.8 794,487 - Dshi_0789 0.18 -0.3 794,576 + Dshi_0789 0.22 +0.4 794,581 + Dshi_0789 0.22 +0.1 794,637 - Dshi_0789 0.25 +0.1 794,646 - Dshi_0789 0.26 -0.2 794,647 - Dshi_0789 0.26 -0.6 794,656 - Dshi_0789 0.26 +0.7 794,962 - Dshi_0789 0.41 +0.9 794,977 - Dshi_0789 0.42 +0.7 794,987 - Dshi_0789 0.43 +0.3 795,059 + Dshi_0789 0.46 -0.7 795,085 + Dshi_0789 0.47 -0.0 795,097 + Dshi_0789 0.48 +2.0 795,101 + Dshi_0789 0.48 -0.0
Or see this region's nucleotide sequence