Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0776 and Dshi_0777 overlap by 16 nucleotides Dshi_0777 and Dshi_0778 are separated by 128 nucleotides Dshi_0778 and Dshi_0779 are separated by 120 nucleotides
Dshi_0776: Dshi_0776 - cobalamin B12-binding domain protein (RefSeq), at 781,394 to 782,179
_0776
Dshi_0777: Dshi_0777 - threonyl-tRNA synthetase (RefSeq), at 782,164 to 784,128
_0777
Dshi_0778: Dshi_0778 - hypothetical protein (RefSeq), at 784,257 to 784,445
_0778
Dshi_0779: Dshi_0779 - transcriptional regulator, MarR family with acetyltransferase activity (RefSeq), at 784,566 to 785,522
_0779
Position (kb) 782
783
784
785 Strain fitness (log2 ratio) -1
0
1 at 781.395 kb on + strand at 781.569 kb on + strand, within Dshi_0776 at 781.645 kb on - strand, within Dshi_0776 at 781.709 kb on + strand, within Dshi_0776 at 782.003 kb on - strand, within Dshi_0776 at 782.113 kb on - strand at 782.190 kb on + strand at 784.255 kb on + strand at 784.255 kb on + strand at 784.291 kb on + strand, within Dshi_0778 at 784.451 kb on - strand at 784.459 kb on - strand at 784.567 kb on - strand at 784.882 kb on - strand, within Dshi_0779 at 785.031 kb on - strand, within Dshi_0779
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 781,395 + +0.6 781,569 + Dshi_0776 0.22 -0.5 781,645 - Dshi_0776 0.32 -0.4 781,709 + Dshi_0776 0.40 -1.1 782,003 - Dshi_0776 0.77 -0.9 782,113 - +0.0 782,190 + -0.0 784,255 + -0.3 784,255 + +0.2 784,291 + Dshi_0778 0.18 -1.0 784,451 - -0.6 784,459 - +0.7 784,567 - -0.0 784,882 - Dshi_0779 0.33 +0.4 785,031 - Dshi_0779 0.49 -0.2
Or see this region's nucleotide sequence