Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0718

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0717 and Dshi_0718 are separated by 349 nucleotidesDshi_0718 and Dshi_0719 are separated by 99 nucleotidesDshi_0719 and Dshi_0720 overlap by 8 nucleotidesDshi_0720 and Dshi_0721 overlap by 4 nucleotides Dshi_0717: Dshi_0717 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 724,680 to 725,906 _0717 Dshi_0718: Dshi_0718 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) (from data), at 726,256 to 727,788 _0718 Dshi_0719: Dshi_0719 - hypothetical protein (RefSeq), at 727,888 to 728,286 _0719 Dshi_0720: Dshi_0720 - Endoribonuclease L-PSP (RefSeq), at 728,279 to 728,668 _0720 Dshi_0721: Dshi_0721 - hypothetical protein (RefSeq), at 728,665 to 729,036 _0721 Position (kb) 726 727 728Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 725.266 kb on + strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.329 kb on + strand, within Dshi_0717at 725.329 kb on + strand, within Dshi_0717at 725.341 kb on - strand, within Dshi_0717at 725.467 kb on + strand, within Dshi_0717at 725.507 kb on + strand, within Dshi_0717at 725.518 kb on - strand, within Dshi_0717at 725.597 kb on - strand, within Dshi_0717at 725.615 kb on + strand, within Dshi_0717at 725.745 kb on + strand, within Dshi_0717at 725.745 kb on - strand, within Dshi_0717at 725.753 kb on - strand, within Dshi_0717at 725.753 kb on - strand, within Dshi_0717at 725.848 kb on - strandat 725.863 kb on + strandat 725.871 kb on + strandat 725.908 kb on + strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.979 kb on + strandat 726.005 kb on - strandat 726.063 kb on + strandat 726.063 kb on + strandat 726.063 kb on + strandat 726.071 kb on - strandat 726.071 kb on - strandat 726.071 kb on - strandat 726.226 kb on - strandat 726.253 kb on - strandat 726.255 kb on + strandat 726.422 kb on - strand, within Dshi_0718at 726.459 kb on - strand, within Dshi_0718at 726.533 kb on + strand, within Dshi_0718at 726.538 kb on + strand, within Dshi_0718at 726.563 kb on + strand, within Dshi_0718at 726.691 kb on - strand, within Dshi_0718at 726.766 kb on + strand, within Dshi_0718at 726.777 kb on - strand, within Dshi_0718at 726.815 kb on + strand, within Dshi_0718at 726.825 kb on - strand, within Dshi_0718at 726.844 kb on - strand, within Dshi_0718at 726.878 kb on + strand, within Dshi_0718at 727.210 kb on - strand, within Dshi_0718at 727.230 kb on + strand, within Dshi_0718at 727.257 kb on - strand, within Dshi_0718at 727.355 kb on + strand, within Dshi_0718at 727.428 kb on + strand, within Dshi_0718at 727.428 kb on + strand, within Dshi_0718at 727.441 kb on + strand, within Dshi_0718at 727.456 kb on + strand, within Dshi_0718at 727.457 kb on - strand, within Dshi_0718at 727.467 kb on + strand, within Dshi_0718at 727.510 kb on + strand, within Dshi_0718at 727.590 kb on - strand, within Dshi_0718at 727.836 kb on - strandat 727.875 kb on - strandat 727.880 kb on - strandat 727.915 kb on + strandat 727.923 kb on + strandat 728.062 kb on + strand, within Dshi_0719at 728.226 kb on + strand, within Dshi_0719at 728.236 kb on + strand, within Dshi_0719at 728.409 kb on + strand, within Dshi_0720at 728.440 kb on + strand, within Dshi_0720at 728.562 kb on - strand, within Dshi_0720at 728.562 kb on - strand, within Dshi_0720at 728.580 kb on - strand, within Dshi_0720at 728.643 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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725,266 + Dshi_0717 0.48 -0.1
725,274 - Dshi_0717 0.48 -0.7
725,274 - Dshi_0717 0.48 -0.9
725,274 - Dshi_0717 0.48 +0.2
725,329 + Dshi_0717 0.53 -0.8
725,329 + Dshi_0717 0.53 -0.1
725,341 - Dshi_0717 0.54 -1.5
725,467 + Dshi_0717 0.64 -2.2
725,507 + Dshi_0717 0.67 -1.6
725,518 - Dshi_0717 0.68 +0.3
725,597 - Dshi_0717 0.75 -0.3
725,615 + Dshi_0717 0.76 -0.8
725,745 + Dshi_0717 0.87 -0.5
725,745 - Dshi_0717 0.87 -1.4
725,753 - Dshi_0717 0.87 -2.6
725,753 - Dshi_0717 0.87 +0.5
725,848 - -0.2
725,863 + -1.2
725,871 + -0.1
725,908 + -1.2
725,916 - -1.6
725,916 - +0.5
725,916 - -0.5
725,916 - +0.1
725,979 + +0.2
726,005 - +0.8
726,063 + -1.9
726,063 + +0.1
726,063 + +0.8
726,071 - +0.6
726,071 - +0.7
726,071 - +0.1
726,226 - -0.5
726,253 - -1.5
726,255 + -2.1
726,422 - Dshi_0718 0.11 -1.1
726,459 - Dshi_0718 0.13 -1.6
726,533 + Dshi_0718 0.18 -3.2
726,538 + Dshi_0718 0.18 -5.6
726,563 + Dshi_0718 0.20 -2.1
726,691 - Dshi_0718 0.28 -2.9
726,766 + Dshi_0718 0.33 -2.7
726,777 - Dshi_0718 0.34 -2.7
726,815 + Dshi_0718 0.36 -2.5
726,825 - Dshi_0718 0.37 -2.5
726,844 - Dshi_0718 0.38 -2.2
726,878 + Dshi_0718 0.41 -4.0
727,210 - Dshi_0718 0.62 -1.7
727,230 + Dshi_0718 0.64 -3.3
727,257 - Dshi_0718 0.65 -3.9
727,355 + Dshi_0718 0.72 -2.2
727,428 + Dshi_0718 0.76 -2.4
727,428 + Dshi_0718 0.76 -2.7
727,441 + Dshi_0718 0.77 -3.0
727,456 + Dshi_0718 0.78 -3.5
727,457 - Dshi_0718 0.78 -2.3
727,467 + Dshi_0718 0.79 -0.5
727,510 + Dshi_0718 0.82 -3.8
727,590 - Dshi_0718 0.87 -1.2
727,836 - -1.2
727,875 - -2.9
727,880 - -4.2
727,915 + -4.9
727,923 + -1.6
728,062 + Dshi_0719 0.44 -0.6
728,226 + Dshi_0719 0.85 -2.7
728,236 + Dshi_0719 0.87 -2.9
728,409 + Dshi_0720 0.33 -3.9
728,440 + Dshi_0720 0.41 -0.9
728,562 - Dshi_0720 0.73 -3.3
728,562 - Dshi_0720 0.73 -2.4
728,580 - Dshi_0720 0.77 -3.6
728,643 - -2.1

Or see this region's nucleotide sequence