Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0714 and Dshi_0715 are separated by 84 nucleotides Dshi_0715 and Dshi_0716 are separated by 13 nucleotides Dshi_0716 and Dshi_0717 are separated by 60 nucleotides
Dshi_0714: Dshi_0714 - protein of unknown function DUF6 transmembrane (RefSeq), at 721,916 to 722,884
_0714
Dshi_0715: Dshi_0715 - protein of unknown function DUF465 (RefSeq), at 722,969 to 723,211
_0715
Dshi_0716: Dshi_0716 - transcriptional regulator, XRE family (RefSeq), at 723,225 to 724,619
_0716
Dshi_0717: Dshi_0717 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 724,680 to 725,906
_0717
Position (kb) 723
724
725 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 722.282 kb on + strand, within Dshi_0714 at 722.604 kb on + strand, within Dshi_0714 at 722.612 kb on + strand, within Dshi_0714 at 722.617 kb on + strand, within Dshi_0714 at 722.777 kb on + strand, within Dshi_0714 at 722.908 kb on + strand at 722.908 kb on + strand at 722.931 kb on + strand at 722.939 kb on - strand at 722.939 kb on - strand at 722.981 kb on + strand at 723.012 kb on + strand, within Dshi_0715 at 723.020 kb on - strand, within Dshi_0715 at 723.020 kb on - strand, within Dshi_0715 at 723.034 kb on + strand, within Dshi_0715 at 723.092 kb on + strand, within Dshi_0715 at 723.133 kb on - strand, within Dshi_0715 at 723.206 kb on + strand at 723.222 kb on + strand at 723.259 kb on - strand at 723.271 kb on - strand at 723.396 kb on - strand, within Dshi_0716 at 723.423 kb on + strand, within Dshi_0716 at 723.424 kb on - strand, within Dshi_0716 at 723.584 kb on + strand, within Dshi_0716 at 723.647 kb on - strand, within Dshi_0716 at 723.811 kb on + strand, within Dshi_0716 at 723.885 kb on - strand, within Dshi_0716 at 723.885 kb on - strand, within Dshi_0716 at 723.885 kb on - strand, within Dshi_0716 at 723.892 kb on - strand, within Dshi_0716 at 723.993 kb on + strand, within Dshi_0716 at 724.041 kb on + strand, within Dshi_0716 at 724.049 kb on - strand, within Dshi_0716 at 724.073 kb on + strand, within Dshi_0716 at 724.142 kb on - strand, within Dshi_0716 at 724.163 kb on + strand, within Dshi_0716 at 724.181 kb on + strand, within Dshi_0716 at 724.189 kb on - strand, within Dshi_0716 at 724.189 kb on - strand, within Dshi_0716 at 724.189 kb on - strand, within Dshi_0716 at 724.191 kb on + strand, within Dshi_0716 at 724.192 kb on + strand, within Dshi_0716 at 724.199 kb on - strand, within Dshi_0716 at 724.234 kb on - strand, within Dshi_0716 at 724.265 kb on - strand, within Dshi_0716 at 724.425 kb on - strand, within Dshi_0716 at 724.479 kb on - strand, within Dshi_0716 at 724.491 kb on + strand at 724.787 kb on + strand at 724.986 kb on + strand at 724.994 kb on - strand, within Dshi_0717 at 725.004 kb on + strand, within Dshi_0717 at 725.055 kb on - strand, within Dshi_0717 at 725.182 kb on - strand, within Dshi_0717 at 725.182 kb on - strand, within Dshi_0717 at 725.182 kb on - strand, within Dshi_0717 at 725.266 kb on + strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.274 kb on - strand, within Dshi_0717 at 725.329 kb on + strand, within Dshi_0717 at 725.329 kb on + strand, within Dshi_0717 at 725.341 kb on - strand, within Dshi_0717 at 725.467 kb on + strand, within Dshi_0717 at 725.507 kb on + strand, within Dshi_0717 at 725.518 kb on - strand, within Dshi_0717 at 725.597 kb on - strand, within Dshi_0717 at 725.615 kb on + strand, within Dshi_0717
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 722,282 + Dshi_0714 0.38 -0.7 722,604 + Dshi_0714 0.71 +1.1 722,612 + Dshi_0714 0.72 -1.2 722,617 + Dshi_0714 0.72 +0.7 722,777 + Dshi_0714 0.89 +0.1 722,908 + -1.1 722,908 + -1.0 722,931 + +0.3 722,939 - -0.2 722,939 - -0.5 722,981 + +0.1 723,012 + Dshi_0715 0.18 -0.4 723,020 - Dshi_0715 0.21 -0.1 723,020 - Dshi_0715 0.21 -0.0 723,034 + Dshi_0715 0.27 +1.0 723,092 + Dshi_0715 0.51 -0.3 723,133 - Dshi_0715 0.67 -1.0 723,206 + -0.1 723,222 + -1.2 723,259 - +0.2 723,271 - +0.1 723,396 - Dshi_0716 0.12 -2.0 723,423 + Dshi_0716 0.14 -3.8 723,424 - Dshi_0716 0.14 -2.2 723,584 + Dshi_0716 0.26 -1.6 723,647 - Dshi_0716 0.30 -0.9 723,811 + Dshi_0716 0.42 -3.2 723,885 - Dshi_0716 0.47 -1.2 723,885 - Dshi_0716 0.47 -3.9 723,885 - Dshi_0716 0.47 -1.6 723,892 - Dshi_0716 0.48 -0.8 723,993 + Dshi_0716 0.55 -2.9 724,041 + Dshi_0716 0.58 -2.3 724,049 - Dshi_0716 0.59 -3.2 724,073 + Dshi_0716 0.61 -3.3 724,142 - Dshi_0716 0.66 -1.5 724,163 + Dshi_0716 0.67 -1.9 724,181 + Dshi_0716 0.69 -4.2 724,189 - Dshi_0716 0.69 -1.6 724,189 - Dshi_0716 0.69 -2.7 724,189 - Dshi_0716 0.69 -2.5 724,191 + Dshi_0716 0.69 -4.3 724,192 + Dshi_0716 0.69 -1.5 724,199 - Dshi_0716 0.70 -3.8 724,234 - Dshi_0716 0.72 -1.0 724,265 - Dshi_0716 0.75 -2.3 724,425 - Dshi_0716 0.86 -1.5 724,479 - Dshi_0716 0.90 -2.9 724,491 + -1.7 724,787 + -0.3 724,986 + +2.2 724,994 - Dshi_0717 0.26 +0.9 725,004 + Dshi_0717 0.26 -0.2 725,055 - Dshi_0717 0.31 -1.3 725,182 - Dshi_0717 0.41 +1.4 725,182 - Dshi_0717 0.41 -0.2 725,182 - Dshi_0717 0.41 +0.0 725,266 + Dshi_0717 0.48 -0.1 725,274 - Dshi_0717 0.48 -0.7 725,274 - Dshi_0717 0.48 -0.9 725,274 - Dshi_0717 0.48 +0.2 725,329 + Dshi_0717 0.53 -0.8 725,329 + Dshi_0717 0.53 -0.1 725,341 - Dshi_0717 0.54 -1.5 725,467 + Dshi_0717 0.64 -2.2 725,507 + Dshi_0717 0.67 -1.6 725,518 - Dshi_0717 0.68 +0.3 725,597 - Dshi_0717 0.75 -0.3 725,615 + Dshi_0717 0.76 -0.8
Or see this region's nucleotide sequence