Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0709 and Dshi_0710 are separated by 65 nucleotides Dshi_0710 and Dshi_0711 overlap by 55 nucleotides Dshi_0711 and Dshi_0712 are separated by 90 nucleotides
Dshi_0709: Dshi_0709 - coenzyme A transferase (RefSeq), at 716,718 to 718,664
_0709
Dshi_0710: Dshi_0710 - hypothetical protein (RefSeq), at 718,730 to 719,377
_0710
Dshi_0711: Dshi_0711 - transcriptional regulator, LysR family (RefSeq), at 719,323 to 720,249
_0711
Dshi_0712: Dshi_0712 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 720,340 to 720,966
_0712
Position (kb) 718
719
720 Strain fitness (log2 ratio) -1
0
1 at 717.797 kb on + strand, within Dshi_0709 at 717.810 kb on + strand, within Dshi_0709 at 717.812 kb on + strand, within Dshi_0709 at 717.818 kb on - strand, within Dshi_0709 at 717.830 kb on - strand, within Dshi_0709 at 717.986 kb on + strand, within Dshi_0709 at 718.290 kb on - strand, within Dshi_0709 at 718.317 kb on + strand, within Dshi_0709 at 718.365 kb on + strand, within Dshi_0709 at 718.366 kb on + strand, within Dshi_0709 at 718.396 kb on - strand, within Dshi_0709 at 718.405 kb on - strand, within Dshi_0709 at 718.407 kb on + strand, within Dshi_0709 at 718.556 kb on + strand at 718.579 kb on + strand at 718.736 kb on - strand at 718.931 kb on - strand, within Dshi_0710 at 719.086 kb on - strand, within Dshi_0710 at 719.246 kb on - strand, within Dshi_0710 at 719.273 kb on + strand, within Dshi_0710 at 719.396 kb on + strand at 719.396 kb on + strand at 719.422 kb on + strand, within Dshi_0711 at 719.638 kb on - strand, within Dshi_0711 at 719.681 kb on - strand, within Dshi_0711 at 719.787 kb on - strand, within Dshi_0711 at 719.787 kb on - strand, within Dshi_0711 at 719.880 kb on - strand, within Dshi_0711 at 719.936 kb on - strand, within Dshi_0711 at 719.938 kb on + strand, within Dshi_0711 at 719.982 kb on + strand, within Dshi_0711 at 720.083 kb on + strand, within Dshi_0711 at 720.091 kb on - strand, within Dshi_0711 at 720.134 kb on + strand, within Dshi_0711 at 720.168 kb on + strand at 720.330 kb on + strand at 720.330 kb on + strand at 720.338 kb on - strand at 720.353 kb on + strand at 720.355 kb on - strand at 720.368 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 717,797 + Dshi_0709 0.55 -0.1 717,810 + Dshi_0709 0.56 -0.2 717,812 + Dshi_0709 0.56 +0.9 717,818 - Dshi_0709 0.56 -1.3 717,830 - Dshi_0709 0.57 +0.8 717,986 + Dshi_0709 0.65 -0.4 718,290 - Dshi_0709 0.81 +0.0 718,317 + Dshi_0709 0.82 -0.5 718,365 + Dshi_0709 0.85 +0.9 718,366 + Dshi_0709 0.85 +0.5 718,396 - Dshi_0709 0.86 +0.1 718,405 - Dshi_0709 0.87 +0.1 718,407 + Dshi_0709 0.87 -0.3 718,556 + +1.2 718,579 + -1.0 718,736 - -0.3 718,931 - Dshi_0710 0.31 -0.6 719,086 - Dshi_0710 0.55 -1.2 719,246 - Dshi_0710 0.80 -1.0 719,273 + Dshi_0710 0.84 +0.1 719,396 + -0.1 719,396 + +0.5 719,422 + Dshi_0711 0.11 -0.9 719,638 - Dshi_0711 0.34 +0.2 719,681 - Dshi_0711 0.39 -0.5 719,787 - Dshi_0711 0.50 -0.2 719,787 - Dshi_0711 0.50 -1.2 719,880 - Dshi_0711 0.60 -0.2 719,936 - Dshi_0711 0.66 -0.8 719,938 + Dshi_0711 0.66 +0.5 719,982 + Dshi_0711 0.71 -0.4 720,083 + Dshi_0711 0.82 +0.5 720,091 - Dshi_0711 0.83 -0.5 720,134 + Dshi_0711 0.87 -0.1 720,168 + -0.2 720,330 + +0.2 720,330 + +0.8 720,338 - -0.2 720,353 + -0.0 720,355 - +0.3 720,368 + +0.1
Or see this region's nucleotide sequence