Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0667 and Dshi_0668 are separated by 4 nucleotides Dshi_0668 and Dshi_0669 are separated by 87 nucleotides Dshi_0669 and Dshi_0670 are separated by 173 nucleotides
Dshi_0667: Dshi_0667 - heavy metal translocating P-type ATPase (RefSeq), at 671,120 to 673,309
_0667
Dshi_0668: Dshi_0668 - cytochrome oxidase maturation protein, cbb3-type (RefSeq), at 673,314 to 673,472
_0668
Dshi_0669: Dshi_0669 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 673,560 to 675,041
_0669
Dshi_0670: Dshi_0670 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 675,215 to 675,919
_0670
Position (kb) 673
674
675
676 Strain fitness (log2 ratio) -1
0
1 at 672.986 kb on - strand, within Dshi_0667 at 673.338 kb on - strand, within Dshi_0668 at 673.345 kb on + strand, within Dshi_0668 at 673.345 kb on + strand, within Dshi_0668 at 673.588 kb on + strand at 673.919 kb on - strand, within Dshi_0669 at 675.099 kb on + strand at 675.280 kb on + strand at 675.310 kb on + strand, within Dshi_0670 at 675.415 kb on + strand, within Dshi_0670 at 675.438 kb on - strand, within Dshi_0670 at 675.443 kb on + strand, within Dshi_0670 at 675.635 kb on + strand, within Dshi_0670 at 675.643 kb on - strand, within Dshi_0670 at 675.655 kb on + strand, within Dshi_0670 at 675.843 kb on - strand, within Dshi_0670 at 675.899 kb on - strand at 675.935 kb on + strand at 675.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 672,986 - Dshi_0667 0.85 -0.9 673,338 - Dshi_0668 0.15 -1.0 673,345 + Dshi_0668 0.19 -0.1 673,345 + Dshi_0668 0.19 +1.0 673,588 + +0.5 673,919 - Dshi_0669 0.24 -1.0 675,099 + -0.2 675,280 + +0.3 675,310 + Dshi_0670 0.13 +0.2 675,415 + Dshi_0670 0.28 -0.5 675,438 - Dshi_0670 0.32 +0.3 675,443 + Dshi_0670 0.32 +0.9 675,635 + Dshi_0670 0.60 +0.0 675,643 - Dshi_0670 0.61 +0.2 675,655 + Dshi_0670 0.62 -0.2 675,843 - Dshi_0670 0.89 +1.2 675,899 - -0.5 675,935 + -0.8 675,950 - -0.2
Or see this region's nucleotide sequence