Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0430

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0428 and Dshi_0429 are separated by 112 nucleotidesDshi_0429 and Dshi_0430 are separated by 22 nucleotidesDshi_0430 and Dshi_0431 are separated by 203 nucleotides Dshi_0428: Dshi_0428 - Poly-beta-hydroxybutyrate polymerase domain protein (RefSeq), at 419,269 to 421,152 _0428 Dshi_0429: Dshi_0429 - uncharacterized conserved coiled coil protein (RefSeq), at 421,265 to 421,552 _0429 Dshi_0430: Dshi_0430 - hypothetical protein (RefSeq), at 421,575 to 422,009 _0430 Dshi_0431: Dshi_0431 - C4-dicarboxylate anaerobic carrier (RefSeq), at 422,213 to 423,661 _0431 Position (kb) 421 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 420.596 kb on + strand, within Dshi_0428at 420.606 kb on - strand, within Dshi_0428at 420.606 kb on - strand, within Dshi_0428at 420.674 kb on - strand, within Dshi_0428at 420.685 kb on - strand, within Dshi_0428at 420.686 kb on + strand, within Dshi_0428at 420.712 kb on - strand, within Dshi_0428at 420.727 kb on + strand, within Dshi_0428at 420.734 kb on + strand, within Dshi_0428at 420.884 kb on + strand, within Dshi_0428at 420.889 kb on + strand, within Dshi_0428at 420.938 kb on - strand, within Dshi_0428at 420.945 kb on + strand, within Dshi_0428at 420.945 kb on + strand, within Dshi_0428at 420.953 kb on - strand, within Dshi_0428at 420.969 kb on + strandat 421.017 kb on - strandat 421.019 kb on + strandat 421.072 kb on - strandat 421.103 kb on - strandat 421.133 kb on + strandat 421.141 kb on - strandat 421.154 kb on - strandat 421.188 kb on + strandat 421.188 kb on + strandat 421.188 kb on + strandat 421.232 kb on + strandat 421.245 kb on - strandat 421.251 kb on - strandat 421.251 kb on - strandat 421.259 kb on - strandat 421.263 kb on + strandat 421.271 kb on - strandat 421.320 kb on + strand, within Dshi_0429at 421.351 kb on - strand, within Dshi_0429at 421.355 kb on + strand, within Dshi_0429at 421.415 kb on - strand, within Dshi_0429at 421.536 kb on + strandat 421.555 kb on + strandat 421.573 kb on + strandat 421.573 kb on + strandat 421.581 kb on - strandat 421.582 kb on + strandat 421.582 kb on + strandat 421.590 kb on - strandat 421.590 kb on - strandat 421.599 kb on - strandat 421.600 kb on + strandat 421.610 kb on - strandat 421.752 kb on - strand, within Dshi_0430at 421.796 kb on - strand, within Dshi_0430at 421.801 kb on - strand, within Dshi_0430at 421.923 kb on - strand, within Dshi_0430at 421.956 kb on + strand, within Dshi_0430at 421.969 kb on - strandat 422.007 kb on - strandat 422.007 kb on - strandat 422.068 kb on + strandat 422.081 kb on - strandat 422.081 kb on - strandat 422.094 kb on + strandat 422.121 kb on + strandat 422.129 kb on - strandat 422.160 kb on - strandat 422.253 kb on + strandat 422.266 kb on + strandat 422.315 kb on + strandat 422.315 kb on + strandat 422.323 kb on - strandat 422.325 kb on + strandat 422.325 kb on + strandat 422.328 kb on - strandat 422.366 kb on + strand, within Dshi_0431at 422.434 kb on - strand, within Dshi_0431at 422.464 kb on + strand, within Dshi_0431at 422.478 kb on + strand, within Dshi_0431at 422.479 kb on - strand, within Dshi_0431at 422.517 kb on - strand, within Dshi_0431at 422.558 kb on - strand, within Dshi_0431at 422.592 kb on + strand, within Dshi_0431at 422.784 kb on + strand, within Dshi_0431at 422.798 kb on - strand, within Dshi_0431at 422.924 kb on - strand, within Dshi_0431at 422.939 kb on - strand, within Dshi_0431

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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420,596 + Dshi_0428 0.70 +0.6
420,606 - Dshi_0428 0.71 -0.4
420,606 - Dshi_0428 0.71 -0.3
420,674 - Dshi_0428 0.75 -0.7
420,685 - Dshi_0428 0.75 -0.3
420,686 + Dshi_0428 0.75 +1.0
420,712 - Dshi_0428 0.77 -0.4
420,727 + Dshi_0428 0.77 +0.1
420,734 + Dshi_0428 0.78 +0.0
420,884 + Dshi_0428 0.86 -0.0
420,889 + Dshi_0428 0.86 -0.7
420,938 - Dshi_0428 0.89 +0.3
420,945 + Dshi_0428 0.89 +0.2
420,945 + Dshi_0428 0.89 -0.1
420,953 - Dshi_0428 0.89 -0.4
420,969 + +0.8
421,017 - -0.2
421,019 + -1.3
421,072 - -0.2
421,103 - +0.9
421,133 + -0.1
421,141 - -0.9
421,154 - -0.1
421,188 + +0.2
421,188 + -0.5
421,188 + +0.2
421,232 + -0.6
421,245 - +0.2
421,251 - +1.1
421,251 - +0.2
421,259 - -0.7
421,263 + +0.2
421,271 - +0.2
421,320 + Dshi_0429 0.19 -0.3
421,351 - Dshi_0429 0.30 -1.5
421,355 + Dshi_0429 0.31 -1.8
421,415 - Dshi_0429 0.52 -0.1
421,536 + -2.3
421,555 + +0.1
421,573 + +1.1
421,573 + -1.1
421,581 - -0.2
421,582 + -0.4
421,582 + -0.9
421,590 - -0.1
421,590 - -0.0
421,599 - -1.3
421,600 + +0.3
421,610 - +0.6
421,752 - Dshi_0430 0.41 -0.4
421,796 - Dshi_0430 0.51 -0.6
421,801 - Dshi_0430 0.52 -1.8
421,923 - Dshi_0430 0.80 -1.9
421,956 + Dshi_0430 0.88 -0.8
421,969 - -0.3
422,007 - +0.4
422,007 - -0.3
422,068 + -1.0
422,081 - -1.0
422,081 - -0.6
422,094 + -0.5
422,121 + -0.1
422,129 - -0.1
422,160 - +1.2
422,253 + +1.0
422,266 + -0.1
422,315 + +1.3
422,315 + -0.9
422,323 - +0.2
422,325 + -0.2
422,325 + -0.3
422,328 - +0.4
422,366 + Dshi_0431 0.11 -0.1
422,434 - Dshi_0431 0.15 -0.0
422,464 + Dshi_0431 0.17 +0.0
422,478 + Dshi_0431 0.18 -0.4
422,479 - Dshi_0431 0.18 -1.2
422,517 - Dshi_0431 0.21 -0.1
422,558 - Dshi_0431 0.24 -0.0
422,592 + Dshi_0431 0.26 +0.8
422,784 + Dshi_0431 0.39 -0.2
422,798 - Dshi_0431 0.40 -0.0
422,924 - Dshi_0431 0.49 +1.9
422,939 - Dshi_0431 0.50 -1.5

Or see this region's nucleotide sequence