Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0406 and Dshi_0407 are separated by 262 nucleotides Dshi_0407 and Dshi_0408 are separated by 10 nucleotides Dshi_0408 and Dshi_0409 are separated by 104 nucleotides
Dshi_0406: Dshi_0406 - hypothetical protein (RefSeq), at 400,543 to 401,841
_0406
Dshi_0407: Dshi_0407 - transcriptional regulator, XRE family (RefSeq), at 402,104 to 402,430
_0407
Dshi_0408: Dshi_0408 - protein of unknown function DUF955 (RefSeq), at 402,441 to 403,163
_0408
Dshi_0409: Dshi_0409 - hypothetical protein (RefSeq), at 403,268 to 403,912
_0409
Position (kb) 402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 401.107 kb on + strand, within Dshi_0406 at 401.107 kb on + strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.115 kb on - strand, within Dshi_0406 at 401.123 kb on - strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.125 kb on + strand, within Dshi_0406 at 401.127 kb on + strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.133 kb on - strand, within Dshi_0406 at 401.208 kb on + strand, within Dshi_0406 at 401.222 kb on - strand, within Dshi_0406 at 401.241 kb on + strand, within Dshi_0406 at 401.241 kb on + strand, within Dshi_0406 at 401.256 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.272 kb on + strand, within Dshi_0406 at 401.275 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.280 kb on - strand, within Dshi_0406 at 401.356 kb on + strand, within Dshi_0406 at 401.374 kb on - strand, within Dshi_0406 at 401.380 kb on + strand, within Dshi_0406 at 401.392 kb on + strand, within Dshi_0406 at 401.402 kb on + strand, within Dshi_0406 at 401.402 kb on + strand, within Dshi_0406 at 401.408 kb on + strand, within Dshi_0406 at 401.410 kb on - strand, within Dshi_0406 at 401.411 kb on - strand, within Dshi_0406 at 401.414 kb on - strand, within Dshi_0406 at 401.474 kb on - strand, within Dshi_0406 at 401.477 kb on + strand, within Dshi_0406 at 401.477 kb on + strand, within Dshi_0406 at 401.485 kb on - strand, within Dshi_0406 at 401.495 kb on - strand, within Dshi_0406 at 401.520 kb on - strand, within Dshi_0406 at 401.545 kb on + strand, within Dshi_0406 at 401.577 kb on - strand, within Dshi_0406 at 401.586 kb on - strand, within Dshi_0406 at 401.657 kb on + strand, within Dshi_0406 at 401.662 kb on + strand, within Dshi_0406 at 401.662 kb on + strand, within Dshi_0406 at 401.662 kb on + strand, within Dshi_0406 at 401.670 kb on - strand, within Dshi_0406 at 401.717 kb on + strand at 401.778 kb on + strand at 401.806 kb on + strand at 401.877 kb on - strand at 401.959 kb on + strand at 401.991 kb on - strand at 402.013 kb on + strand at 402.115 kb on + strand at 402.131 kb on - strand at 402.231 kb on + strand, within Dshi_0407 at 402.289 kb on + strand, within Dshi_0407 at 402.311 kb on + strand, within Dshi_0407 at 402.321 kb on + strand, within Dshi_0407 at 402.346 kb on - strand, within Dshi_0407 at 402.566 kb on + strand, within Dshi_0408 at 402.583 kb on + strand, within Dshi_0408 at 402.621 kb on + strand, within Dshi_0408 at 402.630 kb on - strand, within Dshi_0408 at 402.678 kb on + strand, within Dshi_0408 at 402.836 kb on + strand, within Dshi_0408 at 402.869 kb on + strand, within Dshi_0408 at 402.884 kb on + strand, within Dshi_0408 at 402.927 kb on + strand, within Dshi_0408 at 402.927 kb on + strand, within Dshi_0408 at 402.987 kb on - strand, within Dshi_0408 at 402.996 kb on - strand, within Dshi_0408 at 402.996 kb on - strand, within Dshi_0408 at 403.020 kb on - strand, within Dshi_0408 at 403.267 kb on + strand at 403.376 kb on - strand, within Dshi_0409
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 401,107 + Dshi_0406 0.43 -0.8 401,107 + Dshi_0406 0.43 -0.7 401,115 - Dshi_0406 0.44 -1.3 401,115 - Dshi_0406 0.44 -1.0 401,115 - Dshi_0406 0.44 +0.6 401,123 - Dshi_0406 0.45 -1.2 401,125 + Dshi_0406 0.45 +0.2 401,125 + Dshi_0406 0.45 -0.3 401,125 + Dshi_0406 0.45 +0.0 401,127 + Dshi_0406 0.45 -1.9 401,133 - Dshi_0406 0.45 +0.3 401,133 - Dshi_0406 0.45 +0.5 401,133 - Dshi_0406 0.45 -1.3 401,133 - Dshi_0406 0.45 +0.9 401,133 - Dshi_0406 0.45 -0.1 401,133 - Dshi_0406 0.45 -0.6 401,133 - Dshi_0406 0.45 +0.2 401,133 - Dshi_0406 0.45 -0.5 401,133 - Dshi_0406 0.45 -0.3 401,208 + Dshi_0406 0.51 -0.0 401,222 - Dshi_0406 0.52 -0.7 401,241 + Dshi_0406 0.54 +0.1 401,241 + Dshi_0406 0.54 +0.3 401,256 + Dshi_0406 0.55 -0.5 401,272 + Dshi_0406 0.56 -1.4 401,272 + Dshi_0406 0.56 -1.7 401,272 + Dshi_0406 0.56 +0.5 401,272 + Dshi_0406 0.56 -0.7 401,272 + Dshi_0406 0.56 +0.5 401,272 + Dshi_0406 0.56 +0.9 401,272 + Dshi_0406 0.56 -0.7 401,275 - Dshi_0406 0.56 -0.2 401,280 - Dshi_0406 0.57 -1.8 401,280 - Dshi_0406 0.57 +1.1 401,280 - Dshi_0406 0.57 -1.2 401,356 + Dshi_0406 0.63 -0.8 401,374 - Dshi_0406 0.64 -0.3 401,380 + Dshi_0406 0.64 +0.2 401,392 + Dshi_0406 0.65 -0.8 401,402 + Dshi_0406 0.66 -0.1 401,402 + Dshi_0406 0.66 -0.8 401,408 + Dshi_0406 0.67 -1.2 401,410 - Dshi_0406 0.67 -0.6 401,411 - Dshi_0406 0.67 -0.1 401,414 - Dshi_0406 0.67 -0.2 401,474 - Dshi_0406 0.72 +1.2 401,477 + Dshi_0406 0.72 -0.1 401,477 + Dshi_0406 0.72 +1.9 401,485 - Dshi_0406 0.73 +0.1 401,495 - Dshi_0406 0.73 -0.5 401,520 - Dshi_0406 0.75 -1.9 401,545 + Dshi_0406 0.77 +1.1 401,577 - Dshi_0406 0.80 -0.2 401,586 - Dshi_0406 0.80 +0.5 401,657 + Dshi_0406 0.86 -1.8 401,662 + Dshi_0406 0.86 -0.4 401,662 + Dshi_0406 0.86 +0.9 401,662 + Dshi_0406 0.86 -0.6 401,670 - Dshi_0406 0.87 +0.1 401,717 + -0.6 401,778 + -0.7 401,806 + -0.1 401,877 - -0.5 401,959 + -0.3 401,991 - -1.0 402,013 + -0.8 402,115 + +0.3 402,131 - -0.4 402,231 + Dshi_0407 0.39 -0.5 402,289 + Dshi_0407 0.57 -1.5 402,311 + Dshi_0407 0.63 -1.2 402,321 + Dshi_0407 0.66 -1.1 402,346 - Dshi_0407 0.74 -0.8 402,566 + Dshi_0408 0.17 -1.5 402,583 + Dshi_0408 0.20 +0.1 402,621 + Dshi_0408 0.25 -0.5 402,630 - Dshi_0408 0.26 +0.1 402,678 + Dshi_0408 0.33 -1.7 402,836 + Dshi_0408 0.55 +0.8 402,869 + Dshi_0408 0.59 -0.0 402,884 + Dshi_0408 0.61 -0.9 402,927 + Dshi_0408 0.67 +0.4 402,927 + Dshi_0408 0.67 -0.3 402,987 - Dshi_0408 0.76 -0.6 402,996 - Dshi_0408 0.77 -0.6 402,996 - Dshi_0408 0.77 -1.0 403,020 - Dshi_0408 0.80 +0.1 403,267 + +0.9 403,376 - Dshi_0409 0.17 +0.4
Or see this region's nucleotide sequence