Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0379 and Dshi_0380 are separated by 49 nucleotides Dshi_0380 and Dshi_0381 are separated by 62 nucleotides
Dshi_0379: Dshi_0379 - inner-membrane translocator (RefSeq), at 361,062 to 362,138
_0379
Dshi_0380: Dshi_0380 - hypothetical protein (RefSeq), at 362,188 to 363,468
_0380
Dshi_0381: Dshi_0381 - ABC transporter related (RefSeq), at 363,531 to 364,355
_0381
Position (kb)
362
363
364 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 361.262 kb on - strand, within Dshi_0379 at 361.307 kb on + strand, within Dshi_0379 at 361.310 kb on - strand, within Dshi_0379 at 361.322 kb on + strand, within Dshi_0379 at 361.383 kb on + strand, within Dshi_0379 at 361.415 kb on - strand, within Dshi_0379 at 361.539 kb on - strand, within Dshi_0379 at 361.547 kb on + strand, within Dshi_0379 at 361.555 kb on - strand, within Dshi_0379 at 361.753 kb on + strand, within Dshi_0379 at 361.761 kb on - strand, within Dshi_0379 at 362.000 kb on - strand, within Dshi_0379 at 362.068 kb on - strand at 362.142 kb on + strand at 362.264 kb on - strand at 362.280 kb on + strand at 362.286 kb on + strand at 362.371 kb on + strand, within Dshi_0380 at 362.413 kb on + strand, within Dshi_0380 at 362.439 kb on - strand, within Dshi_0380 at 362.478 kb on + strand, within Dshi_0380 at 362.500 kb on - strand, within Dshi_0380 at 362.578 kb on + strand, within Dshi_0380 at 362.586 kb on - strand, within Dshi_0380 at 362.590 kb on + strand, within Dshi_0380 at 362.620 kb on - strand, within Dshi_0380 at 362.651 kb on - strand, within Dshi_0380 at 362.670 kb on + strand, within Dshi_0380 at 362.879 kb on - strand, within Dshi_0380 at 362.986 kb on + strand, within Dshi_0380 at 363.093 kb on + strand, within Dshi_0380 at 363.096 kb on - strand, within Dshi_0380 at 363.288 kb on - strand, within Dshi_0380 at 363.306 kb on - strand, within Dshi_0380 at 363.346 kb on + strand at 363.346 kb on + strand at 363.346 kb on + strand at 363.436 kb on + strand at 363.541 kb on - strand at 363.609 kb on + strand at 363.611 kb on + strand at 363.686 kb on - strand, within Dshi_0381 at 363.739 kb on + strand, within Dshi_0381 at 363.811 kb on - strand, within Dshi_0381 at 363.854 kb on - strand, within Dshi_0381 at 363.978 kb on + strand, within Dshi_0381 at 363.986 kb on - strand, within Dshi_0381 at 364.106 kb on - strand, within Dshi_0381 at 364.293 kb on - strand at 364.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 361,262 - Dshi_0379 0.19 -0.4 361,307 + Dshi_0379 0.23 -1.8 361,310 - Dshi_0379 0.23 -0.5 361,322 + Dshi_0379 0.24 -0.0 361,383 + Dshi_0379 0.30 +0.0 361,415 - Dshi_0379 0.33 -0.1 361,539 - Dshi_0379 0.44 -1.2 361,547 + Dshi_0379 0.45 -0.0 361,555 - Dshi_0379 0.46 +0.3 361,753 + Dshi_0379 0.64 +0.0 361,761 - Dshi_0379 0.65 +0.5 362,000 - Dshi_0379 0.87 -0.3 362,068 - +0.3 362,142 + -1.2 362,264 - -0.0 362,280 + -0.7 362,286 + -0.6 362,371 + Dshi_0380 0.14 -2.2 362,413 + Dshi_0380 0.18 +1.9 362,439 - Dshi_0380 0.20 +0.1 362,478 + Dshi_0380 0.23 -1.5 362,500 - Dshi_0380 0.24 -0.7 362,578 + Dshi_0380 0.30 -1.9 362,586 - Dshi_0380 0.31 -0.5 362,590 + Dshi_0380 0.31 +0.6 362,620 - Dshi_0380 0.34 +1.3 362,651 - Dshi_0380 0.36 -0.5 362,670 + Dshi_0380 0.38 -0.1 362,879 - Dshi_0380 0.54 +0.8 362,986 + Dshi_0380 0.62 -0.3 363,093 + Dshi_0380 0.71 +0.4 363,096 - Dshi_0380 0.71 +0.4 363,288 - Dshi_0380 0.86 -0.0 363,306 - Dshi_0380 0.87 +2.0 363,346 + -0.9 363,346 + +2.4 363,346 + -1.7 363,436 + -1.2 363,541 - -0.4 363,609 + +0.5 363,611 + +0.7 363,686 - Dshi_0381 0.19 -0.1 363,739 + Dshi_0381 0.25 -2.5 363,811 - Dshi_0381 0.34 -1.1 363,854 - Dshi_0381 0.39 -0.7 363,978 + Dshi_0381 0.54 -0.9 363,986 - Dshi_0381 0.55 -0.6 364,106 - Dshi_0381 0.70 +0.1 364,293 - -1.7 364,335 + -0.2
Or see this region's nucleotide sequence