Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0264 and Dshi_0265 are separated by 294 nucleotides Dshi_0265 and Dshi_0266 are separated by 72 nucleotides Dshi_0266 and Dshi_0267 are separated by 136 nucleotides
Dshi_0264: Dshi_0264 - hypothetical protein (RefSeq), at 260,484 to 261,542
_0264
Dshi_0265: Dshi_0265 - ribosomal protein L10 (RefSeq), at 261,837 to 262,355
_0265
Dshi_0266: Dshi_0266 - ribosomal protein L7/L12 (RefSeq), at 262,428 to 262,808
_0266
Dshi_0267: Dshi_0267 - hypothetical protein (RefSeq), at 262,945 to 264,294
_0267
Position (kb) 261
262
263 Strain fitness (log2 ratio) -1
0
1
2 at 260.913 kb on + strand, within Dshi_0264 at 261.072 kb on + strand, within Dshi_0264 at 261.091 kb on - strand, within Dshi_0264 at 261.287 kb on + strand, within Dshi_0264 at 261.300 kb on + strand, within Dshi_0264 at 261.374 kb on - strand, within Dshi_0264 at 261.376 kb on + strand, within Dshi_0264 at 261.386 kb on + strand, within Dshi_0264 at 261.394 kb on - strand, within Dshi_0264 at 261.507 kb on - strand at 261.507 kb on - strand at 261.568 kb on - strand at 261.568 kb on - strand at 261.568 kb on - strand at 262.879 kb on + strand at 262.902 kb on + strand at 262.902 kb on + strand at 262.966 kb on - strand at 262.968 kb on + strand at 263.002 kb on + strand at 263.018 kb on - strand at 263.021 kb on + strand at 263.033 kb on + strand at 263.072 kb on + strand at 263.128 kb on + strand, within Dshi_0267 at 263.128 kb on + strand, within Dshi_0267 at 263.136 kb on - strand, within Dshi_0267 at 263.181 kb on + strand, within Dshi_0267 at 263.230 kb on - strand, within Dshi_0267 at 263.232 kb on + strand, within Dshi_0267 at 263.265 kb on + strand, within Dshi_0267 at 263.349 kb on - strand, within Dshi_0267
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 260,913 + Dshi_0264 0.41 -0.2 261,072 + Dshi_0264 0.56 -0.2 261,091 - Dshi_0264 0.57 -0.2 261,287 + Dshi_0264 0.76 +0.4 261,300 + Dshi_0264 0.77 +2.5 261,374 - Dshi_0264 0.84 -0.0 261,376 + Dshi_0264 0.84 +0.5 261,386 + Dshi_0264 0.85 +0.8 261,394 - Dshi_0264 0.86 +0.1 261,507 - -0.5 261,507 - -0.8 261,568 - -0.3 261,568 - -1.6 261,568 - +0.3 262,879 + -0.4 262,902 + -0.7 262,902 + -1.4 262,966 - -0.3 262,968 + -1.0 263,002 + +0.5 263,018 - +1.9 263,021 + -0.1 263,033 + +0.7 263,072 + +0.5 263,128 + Dshi_0267 0.14 -0.2 263,128 + Dshi_0267 0.14 -0.1 263,136 - Dshi_0267 0.14 -0.5 263,181 + Dshi_0267 0.17 +0.3 263,230 - Dshi_0267 0.21 -0.4 263,232 + Dshi_0267 0.21 -0.5 263,265 + Dshi_0267 0.24 -0.5 263,349 - Dshi_0267 0.30 +0.5
Or see this region's nucleotide sequence