Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0205 and Dshi_0206 overlap by 8 nucleotides Dshi_0206 and Dshi_0207 are separated by 80 nucleotides Dshi_0207 and Dshi_0208 are separated by 10 nucleotides Dshi_0208 and Dshi_0209 are separated by 37 nucleotides
Dshi_0205: Dshi_0205 - protein of unknown function DUF81 (RefSeq), at 203,871 to 204,635
_0205
Dshi_0206: Dshi_0206 - hypothetical protein (RefSeq), at 204,628 to 205,515
_0206
Dshi_0207: Dshi_0207 - Phosphotransferase system, phosphocarrier protein HPr (RefSeq), at 205,596 to 205,865
_0207
Dshi_0208: Dshi_0208 - PTS system fructose subfamily IIA component (RefSeq), at 205,876 to 206,265
_0208
Dshi_0209: Dshi_0209 - hypothetical protein (RefSeq), at 206,303 to 207,205
_0209
Position (kb) 205
206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 204.603 kb on + strand at 204.754 kb on + strand, within Dshi_0206 at 204.762 kb on - strand, within Dshi_0206 at 204.882 kb on + strand, within Dshi_0206 at 204.999 kb on + strand, within Dshi_0206 at 205.048 kb on + strand, within Dshi_0206 at 205.099 kb on - strand, within Dshi_0206 at 205.141 kb on + strand, within Dshi_0206 at 205.296 kb on - strand, within Dshi_0206 at 205.348 kb on - strand, within Dshi_0206 at 205.353 kb on - strand, within Dshi_0206 at 205.370 kb on + strand, within Dshi_0206 at 205.430 kb on - strand at 205.457 kb on + strand at 205.483 kb on - strand at 205.552 kb on + strand at 205.555 kb on - strand at 205.589 kb on - strand at 205.652 kb on - strand, within Dshi_0207 at 205.830 kb on - strand, within Dshi_0207 at 205.873 kb on + strand at 205.881 kb on - strand at 205.881 kb on - strand at 205.882 kb on - strand at 205.882 kb on - strand at 205.897 kb on + strand at 205.947 kb on - strand, within Dshi_0208 at 206.273 kb on + strand at 206.299 kb on + strand at 206.580 kb on - strand, within Dshi_0209 at 206.581 kb on + strand, within Dshi_0209 at 206.692 kb on + strand, within Dshi_0209 at 206.740 kb on + strand, within Dshi_0209 at 206.740 kb on + strand, within Dshi_0209 at 206.748 kb on - strand, within Dshi_0209 at 206.749 kb on - strand, within Dshi_0209 at 206.751 kb on - strand, within Dshi_0209 at 206.755 kb on + strand, within Dshi_0209 at 206.763 kb on - strand, within Dshi_0209 at 206.775 kb on + strand, within Dshi_0209 at 206.800 kb on - strand, within Dshi_0209
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 204,603 + -1.6 204,754 + Dshi_0206 0.14 +0.6 204,762 - Dshi_0206 0.15 -2.0 204,882 + Dshi_0206 0.29 -2.2 204,999 + Dshi_0206 0.42 -1.1 205,048 + Dshi_0206 0.47 +0.0 205,099 - Dshi_0206 0.53 +0.5 205,141 + Dshi_0206 0.58 -0.2 205,296 - Dshi_0206 0.75 -0.9 205,348 - Dshi_0206 0.81 +0.6 205,353 - Dshi_0206 0.82 +1.3 205,370 + Dshi_0206 0.84 -1.1 205,430 - -0.6 205,457 + -0.1 205,483 - +0.0 205,552 + +1.0 205,555 - +0.8 205,589 - -0.0 205,652 - Dshi_0207 0.21 +1.5 205,830 - Dshi_0207 0.87 +0.6 205,873 + -0.6 205,881 - -0.9 205,881 - -0.4 205,882 - -1.4 205,882 - +1.7 205,897 + -1.0 205,947 - Dshi_0208 0.18 -2.2 206,273 + -0.2 206,299 + +0.2 206,580 - Dshi_0209 0.31 -1.4 206,581 + Dshi_0209 0.31 +0.5 206,692 + Dshi_0209 0.43 -2.0 206,740 + Dshi_0209 0.48 +0.6 206,740 + Dshi_0209 0.48 +0.9 206,748 - Dshi_0209 0.49 -0.2 206,749 - Dshi_0209 0.49 +2.4 206,751 - Dshi_0209 0.50 -0.5 206,755 + Dshi_0209 0.50 -0.1 206,763 - Dshi_0209 0.51 -0.3 206,775 + Dshi_0209 0.52 +0.4 206,800 - Dshi_0209 0.55 +0.2
Or see this region's nucleotide sequence