Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0067 and Dshi_0068 are separated by 4 nucleotides Dshi_0068 and Dshi_0069 are separated by 76 nucleotides Dshi_0069 and Dshi_0070 are separated by 86 nucleotides Dshi_0070 and Dshi_0071 are separated by 47 nucleotides
Dshi_0067: Dshi_0067 - Enoyl-CoA hydratase/isomerase (RefSeq), at 68,339 to 69,085
_0067
Dshi_0068: Dshi_0068 - lipoprotein, putative (RefSeq), at 69,090 to 69,674
_0068
Dshi_0069: Dshi_0069 - Auxin Efflux Carrier (RefSeq), at 69,751 to 70,632
_0069
Dshi_0070: Dshi_0070 - hemimethylated DNA binding protein (RefSeq), at 70,719 to 71,045
_0070
Dshi_0071: Dshi_0071 - Gamma-glutamyltransferase (RefSeq), at 71,093 to 72,676
_0071
Position (kb)
69
70
71 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 68.772 kb on - strand, within Dshi_0067 at 68.935 kb on + strand, within Dshi_0067 at 69.411 kb on - strand, within Dshi_0068 at 69.776 kb on + strand at 69.810 kb on + strand at 69.813 kb on - strand at 69.825 kb on - strand at 69.855 kb on - strand, within Dshi_0069 at 69.960 kb on - strand, within Dshi_0069 at 70.010 kb on + strand, within Dshi_0069 at 70.064 kb on + strand, within Dshi_0069 at 70.157 kb on - strand, within Dshi_0069 at 70.159 kb on + strand, within Dshi_0069 at 70.262 kb on + strand, within Dshi_0069 at 70.270 kb on - strand, within Dshi_0069 at 70.414 kb on + strand, within Dshi_0069 at 70.439 kb on - strand, within Dshi_0069 at 70.441 kb on + strand, within Dshi_0069 at 70.449 kb on - strand, within Dshi_0069 at 70.478 kb on - strand, within Dshi_0069 at 70.489 kb on - strand, within Dshi_0069 at 70.507 kb on + strand, within Dshi_0069 at 70.507 kb on + strand, within Dshi_0069 at 70.539 kb on + strand, within Dshi_0069 at 70.562 kb on - strand at 70.606 kb on + strand at 70.606 kb on + strand at 70.606 kb on + strand at 70.624 kb on - strand at 70.668 kb on + strand at 70.671 kb on - strand at 70.729 kb on - strand at 70.879 kb on + strand, within Dshi_0070 at 71.067 kb on - strand at 71.125 kb on + strand at 71.287 kb on + strand, within Dshi_0071 at 71.411 kb on - strand, within Dshi_0071 at 71.501 kb on + strand, within Dshi_0071
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 68,772 - Dshi_0067 0.58 +0.3 68,935 + Dshi_0067 0.80 +0.1 69,411 - Dshi_0068 0.55 -0.3 69,776 + -2.3 69,810 + -0.7 69,813 - -1.4 69,825 - +1.4 69,855 - Dshi_0069 0.12 +0.5 69,960 - Dshi_0069 0.24 +1.0 70,010 + Dshi_0069 0.29 +0.9 70,064 + Dshi_0069 0.35 +0.3 70,157 - Dshi_0069 0.46 -0.5 70,159 + Dshi_0069 0.46 +0.1 70,262 + Dshi_0069 0.58 +0.8 70,270 - Dshi_0069 0.59 -1.7 70,414 + Dshi_0069 0.75 +0.0 70,439 - Dshi_0069 0.78 -2.8 70,441 + Dshi_0069 0.78 -0.1 70,449 - Dshi_0069 0.79 +0.5 70,478 - Dshi_0069 0.82 +0.9 70,489 - Dshi_0069 0.84 +0.6 70,507 + Dshi_0069 0.86 +0.3 70,507 + Dshi_0069 0.86 +0.8 70,539 + Dshi_0069 0.89 -1.7 70,562 - -0.7 70,606 + -2.5 70,606 + -0.1 70,606 + +0.3 70,624 - +1.1 70,668 + -2.1 70,671 - +0.0 70,729 - +0.9 70,879 + Dshi_0070 0.49 +1.7 71,067 - -0.0 71,125 + -0.1 71,287 + Dshi_0071 0.12 -0.6 71,411 - Dshi_0071 0.20 -0.7 71,501 + Dshi_0071 0.26 +0.7
Or see this region's nucleotide sequence