Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0055

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0053 and Dshi_0054 overlap by 22 nucleotidesDshi_0054 and Dshi_0055 are separated by 14 nucleotidesDshi_0055 and Dshi_0056 overlap by 4 nucleotidesDshi_0056 and Dshi_0057 overlap by 14 nucleotides Dshi_0053: Dshi_0053 - HI0933 family protein (RefSeq), at 49,943 to 51,163 _0053 Dshi_0054: Dshi_0054 - Glutathione S-transferase domain (RefSeq), at 51,142 to 51,732 _0054 Dshi_0055: Dshi_0055 - DNA polymerase III, delta (RefSeq), at 51,747 to 52,772 _0055 Dshi_0056: Dshi_0056 - hypothetical protein (RefSeq), at 52,769 to 53,263 _0056 Dshi_0057: Dshi_0057 - leucyl-tRNA synthetase (RefSeq), at 53,250 to 55,859 _0057 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1at 51.271 kb on - strand, within Dshi_0054at 51.321 kb on - strand, within Dshi_0054at 51.358 kb on - strand, within Dshi_0054at 51.369 kb on - strand, within Dshi_0054at 51.396 kb on + strand, within Dshi_0054at 51.419 kb on + strand, within Dshi_0054at 51.419 kb on + strand, within Dshi_0054at 51.421 kb on + strand, within Dshi_0054at 51.427 kb on - strand, within Dshi_0054at 51.429 kb on - strand, within Dshi_0054at 51.474 kb on - strand, within Dshi_0054at 51.488 kb on - strand, within Dshi_0054at 51.657 kb on + strand, within Dshi_0054at 51.707 kb on + strandat 51.709 kb on + strandat 51.717 kb on - strandat 51.726 kb on - strandat 51.736 kb on - strandat 51.738 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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51,271 - Dshi_0054 0.22 -0.2
51,321 - Dshi_0054 0.30 -1.5
51,358 - Dshi_0054 0.37 -0.9
51,369 - Dshi_0054 0.38 -1.3
51,396 + Dshi_0054 0.43 -0.2
51,419 + Dshi_0054 0.47 -0.7
51,419 + Dshi_0054 0.47 +0.2
51,421 + Dshi_0054 0.47 -0.7
51,427 - Dshi_0054 0.48 -2.2
51,429 - Dshi_0054 0.49 -1.6
51,474 - Dshi_0054 0.56 +1.0
51,488 - Dshi_0054 0.59 -0.1
51,657 + Dshi_0054 0.87 +0.3
51,707 + +1.5
51,709 + -0.8
51,717 - +0.7
51,726 - +1.6
51,736 - -1.0
51,738 + +1.0

Or see this region's nucleotide sequence