Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0035 and Dshi_0036 are separated by 73 nucleotides Dshi_0036 and Dshi_0037 are separated by 340 nucleotides
Dshi_0035: Dshi_0035 - Thioredoxin domain (RefSeq), at 37,578 to 38,489
_0035
Dshi_0036: Dshi_0036 - exodeoxyribonuclease III Xth (RefSeq), at 38,563 to 39,351
_0036
Dshi_0037: Dshi_0037 - LPXTG-motif cell wall anchor domain (RefSeq), at 39,692 to 40,216
_0037
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.724 kb on + strand, within Dshi_0035 at 37.780 kb on - strand, within Dshi_0035 at 37.790 kb on - strand, within Dshi_0035 at 37.939 kb on + strand, within Dshi_0035 at 38.019 kb on - strand, within Dshi_0035 at 38.240 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.415 kb on - strand at 38.541 kb on + strand at 38.677 kb on + strand, within Dshi_0036 at 38.794 kb on - strand, within Dshi_0036 at 38.846 kb on + strand, within Dshi_0036 at 39.021 kb on - strand, within Dshi_0036 at 39.083 kb on + strand, within Dshi_0036 at 39.128 kb on - strand, within Dshi_0036 at 39.162 kb on - strand, within Dshi_0036 at 39.176 kb on - strand, within Dshi_0036 at 39.295 kb on - strand at 39.317 kb on + strand at 39.325 kb on - strand at 39.341 kb on + strand at 39.371 kb on - strand at 39.410 kb on + strand at 39.424 kb on - strand at 39.482 kb on + strand at 39.520 kb on - strand at 39.520 kb on - strand at 39.525 kb on - strand at 39.528 kb on + strand at 39.637 kb on - strand at 39.642 kb on - strand at 39.644 kb on - strand at 39.649 kb on + strand at 39.669 kb on + strand at 39.669 kb on + strand at 39.692 kb on - strand at 39.694 kb on + strand at 39.706 kb on + strand at 39.786 kb on - strand, within Dshi_0037 at 39.930 kb on + strand, within Dshi_0037 at 40.212 kb on + strand at 40.212 kb on + strand at 40.327 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 37,724 + Dshi_0035 0.16 -0.5 37,780 - Dshi_0035 0.22 -0.0 37,790 - Dshi_0035 0.23 -1.1 37,939 + Dshi_0035 0.40 +0.7 38,019 - Dshi_0035 0.48 -1.6 38,240 - Dshi_0035 0.73 +0.6 38,255 - Dshi_0035 0.74 -0.1 38,255 - Dshi_0035 0.74 -0.9 38,255 - Dshi_0035 0.74 -1.5 38,415 - -0.5 38,541 + +0.4 38,677 + Dshi_0036 0.14 -0.4 38,794 - Dshi_0036 0.29 +0.0 38,846 + Dshi_0036 0.36 +2.0 39,021 - Dshi_0036 0.58 -2.0 39,083 + Dshi_0036 0.66 -1.9 39,128 - Dshi_0036 0.72 -0.7 39,162 - Dshi_0036 0.76 +0.8 39,176 - Dshi_0036 0.78 -0.6 39,295 - +0.8 39,317 + -1.4 39,325 - -0.4 39,341 + -1.1 39,371 - +0.1 39,410 + -0.7 39,424 - -0.9 39,482 + +0.4 39,520 - -0.3 39,520 - -0.6 39,525 - -0.6 39,528 + -0.4 39,637 - -0.2 39,642 - -0.0 39,644 - -1.3 39,649 + -1.7 39,669 + -0.3 39,669 + -1.6 39,692 - -0.9 39,694 + +1.1 39,706 + -0.1 39,786 - Dshi_0037 0.18 -0.7 39,930 + Dshi_0037 0.45 -0.9 40,212 + +0.2 40,212 + +0.0 40,327 + -0.1
Or see this region's nucleotide sequence