Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0032 and Dshi_0033 are separated by 160 nucleotides Dshi_0033 and Dshi_0034 overlap by 4 nucleotides Dshi_0034 and Dshi_0035 are separated by 26 nucleotides
Dshi_0032: Dshi_0032 - Three-deoxy-D-manno-octulosonic-acid transferase domain protein (RefSeq), at 35,239 to 36,555
_0032
Dshi_0033: Dshi_0033 - protein of unknown function DUF343 (RefSeq), at 36,716 to 36,907
_0033
Dshi_0034: Dshi_0034 - peptidase S16 lon domain protein (RefSeq), at 36,904 to 37,551
_0034
Dshi_0035: Dshi_0035 - Thioredoxin domain (RefSeq), at 37,578 to 38,489
_0035
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1 at 36.701 kb on - strand at 36.789 kb on - strand, within Dshi_0033 at 36.854 kb on - strand, within Dshi_0033 at 36.962 kb on - strand at 37.078 kb on - strand, within Dshi_0034 at 37.097 kb on - strand, within Dshi_0034 at 37.212 kb on - strand, within Dshi_0034 at 37.243 kb on - strand, within Dshi_0034 at 37.364 kb on + strand, within Dshi_0034 at 37.366 kb on + strand, within Dshi_0034 at 37.724 kb on + strand, within Dshi_0035 at 37.780 kb on - strand, within Dshi_0035 at 37.790 kb on - strand, within Dshi_0035 at 37.939 kb on + strand, within Dshi_0035 at 38.019 kb on - strand, within Dshi_0035 at 38.240 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.415 kb on - strand at 38.541 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 36,701 - +0.3 36,789 - Dshi_0033 0.38 -0.5 36,854 - Dshi_0033 0.72 -1.7 36,962 - -1.9 37,078 - Dshi_0034 0.27 +0.4 37,097 - Dshi_0034 0.30 -0.4 37,212 - Dshi_0034 0.48 +0.1 37,243 - Dshi_0034 0.52 +1.2 37,364 + Dshi_0034 0.71 +0.5 37,366 + Dshi_0034 0.71 +0.7 37,724 + Dshi_0035 0.16 -0.5 37,780 - Dshi_0035 0.22 -0.0 37,790 - Dshi_0035 0.23 -1.1 37,939 + Dshi_0035 0.40 +0.7 38,019 - Dshi_0035 0.48 -1.6 38,240 - Dshi_0035 0.73 +0.6 38,255 - Dshi_0035 0.74 -0.1 38,255 - Dshi_0035 0.74 -0.9 38,255 - Dshi_0035 0.74 -1.5 38,415 - -0.5 38,541 + +0.4
Or see this region's nucleotide sequence