Experiment: nitrate 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0893 and Psest_0895 are separated by 568 nucleotides Psest_0895 and Psest_0897 are separated by 668 nucleotides
Psest_0893: Psest_0893 - Transcriptional regulator, at 969,263 to 970,177
_0893
Psest_0895: Psest_0895 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 970,746 to 971,885
_0895
Psest_0897: Psest_0897 - VRR-NUC domain., at 972,554 to 974,193
_0897
Position (kb) 970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 969.753 kb on - strand, within Psest_0893 at 969.753 kb on - strand, within Psest_0893 at 969.796 kb on + strand, within Psest_0893 at 969.796 kb on + strand, within Psest_0893 at 969.796 kb on + strand, within Psest_0893 at 969.797 kb on - strand, within Psest_0893 at 969.797 kb on - strand, within Psest_0893 at 969.813 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.817 kb on + strand, within Psest_0893 at 969.818 kb on - strand, within Psest_0893 at 969.818 kb on - strand, within Psest_0893 at 969.873 kb on + strand, within Psest_0893 at 969.874 kb on - strand, within Psest_0893 at 969.874 kb on - strand, within Psest_0893 at 969.916 kb on + strand, within Psest_0893 at 969.916 kb on + strand, within Psest_0893 at 969.916 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.068 kb on + strand, within Psest_0893 at 970.069 kb on - strand, within Psest_0893 at 970.069 kb on - strand, within Psest_0893 at 970.069 kb on - strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.070 kb on + strand, within Psest_0893 at 970.071 kb on - strand, within Psest_0893 at 970.071 kb on - strand, within Psest_0893 at 970.071 kb on - strand, within Psest_0893 at 970.116 kb on - strand at 970.116 kb on - strand at 970.126 kb on + strand at 970.127 kb on - strand at 970.127 kb on - strand at 970.127 kb on - strand at 970.152 kb on + strand at 970.152 kb on + strand at 970.152 kb on + strand at 970.153 kb on - strand at 970.153 kb on - strand at 970.175 kb on + strand at 970.175 kb on + strand at 970.175 kb on + strand at 970.175 kb on + strand at 970.175 kb on + strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.176 kb on - strand at 970.185 kb on - strand at 970.222 kb on + strand at 970.222 kb on + strand at 970.222 kb on + strand at 970.222 kb on + strand at 970.223 kb on - strand at 970.223 kb on - strand at 970.243 kb on + strand at 970.243 kb on + strand at 970.243 kb on + strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.244 kb on - strand at 970.270 kb on + strand at 970.324 kb on + strand at 970.324 kb on + strand at 970.325 kb on - strand at 970.325 kb on - strand at 970.325 kb on - strand at 970.326 kb on + strand at 970.327 kb on - strand at 970.327 kb on - strand at 970.327 kb on - strand at 970.327 kb on - strand at 970.339 kb on + strand at 970.354 kb on + strand at 970.355 kb on - strand at 970.391 kb on - strand at 970.391 kb on - strand at 970.391 kb on - strand at 970.391 kb on - strand at 970.431 kb on + strand at 970.432 kb on - strand at 970.434 kb on - strand at 970.499 kb on - strand at 970.546 kb on + strand at 970.546 kb on + strand at 970.601 kb on + strand at 970.676 kb on + strand at 970.676 kb on + strand at 970.676 kb on + strand at 970.676 kb on + strand at 970.676 kb on + strand at 970.676 kb on + strand at 970.677 kb on - strand at 970.677 kb on - strand at 970.677 kb on - strand at 970.677 kb on - strand at 970.695 kb on + strand at 970.695 kb on + strand at 970.696 kb on - strand at 970.696 kb on - strand at 970.854 kb on - strand at 970.854 kb on - strand at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.878 kb on + strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.879 kb on - strand, within Psest_0895 at 970.948 kb on + strand, within Psest_0895 at 970.948 kb on + strand, within Psest_0895 at 970.949 kb on - strand, within Psest_0895 at 970.949 kb on - strand, within Psest_0895 at 971.112 kb on + strand, within Psest_0895 at 971.112 kb on + strand, within Psest_0895 at 971.112 kb on + strand, within Psest_0895 at 971.112 kb on + strand, within Psest_0895 at 971.112 kb on + strand, within Psest_0895 at 971.113 kb on - strand, within Psest_0895 at 971.205 kb on + strand, within Psest_0895 at 971.206 kb on - strand, within Psest_0895 at 971.206 kb on - strand, within Psest_0895 at 971.206 kb on - strand, within Psest_0895 at 971.206 kb on - strand, within Psest_0895 at 971.206 kb on - strand, within Psest_0895 at 971.289 kb on + strand, within Psest_0895 at 971.290 kb on - strand, within Psest_0895 at 971.359 kb on + strand, within Psest_0895 at 971.359 kb on + strand, within Psest_0895 at 971.360 kb on - strand, within Psest_0895 at 971.360 kb on - strand, within Psest_0895 at 971.360 kb on - strand, within Psest_0895 at 971.362 kb on + strand, within Psest_0895 at 971.362 kb on + strand, within Psest_0895 at 971.362 kb on + strand, within Psest_0895 at 971.363 kb on - strand, within Psest_0895 at 971.363 kb on - strand, within Psest_0895 at 971.363 kb on - strand, within Psest_0895 at 971.363 kb on - strand, within Psest_0895 at 971.457 kb on + strand, within Psest_0895 at 971.457 kb on + strand, within Psest_0895 at 971.458 kb on - strand, within Psest_0895 at 971.458 kb on - strand, within Psest_0895 at 971.458 kb on - strand, within Psest_0895 at 971.468 kb on + strand, within Psest_0895 at 971.468 kb on + strand, within Psest_0895 at 971.469 kb on - strand, within Psest_0895 at 971.727 kb on + strand, within Psest_0895 at 971.727 kb on + strand, within Psest_0895 at 971.727 kb on + strand, within Psest_0895 at 971.727 kb on + strand, within Psest_0895 at 971.727 kb on + strand, within Psest_0895 at 971.749 kb on + strand, within Psest_0895 at 971.749 kb on + strand, within Psest_0895 at 971.749 kb on + strand, within Psest_0895 at 971.749 kb on + strand, within Psest_0895 at 971.750 kb on - strand, within Psest_0895 at 971.750 kb on - strand, within Psest_0895 at 971.750 kb on - strand, within Psest_0895 at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.823 kb on + strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.824 kb on - strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.825 kb on + strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.826 kb on - strand at 971.932 kb on + strand at 971.932 kb on + strand at 972.056 kb on - strand at 972.056 kb on - strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.126 kb on + strand at 972.127 kb on - strand at 972.127 kb on - strand at 972.127 kb on - strand at 972.127 kb on - strand at 972.127 kb on - strand at 972.127 kb on - strand at 972.129 kb on + strand at 972.137 kb on + strand at 972.137 kb on + strand at 972.138 kb on - strand at 972.138 kb on - strand at 972.149 kb on + strand at 972.149 kb on + strand at 972.150 kb on - strand at 972.150 kb on - strand at 972.156 kb on + strand at 972.157 kb on - strand at 972.157 kb on - strand at 972.157 kb on - strand at 972.157 kb on - strand at 972.186 kb on - strand at 972.202 kb on - strand at 972.265 kb on - strand at 972.265 kb on - strand at 972.265 kb on - strand at 972.275 kb on - strand at 972.338 kb on + strand at 972.338 kb on + strand at 972.338 kb on + strand at 972.339 kb on - strand at 972.477 kb on - strand at 972.538 kb on + strand at 972.539 kb on - strand at 972.539 kb on - strand at 972.550 kb on + strand at 972.581 kb on + strand at 972.581 kb on + strand at 972.581 kb on + strand at 972.581 kb on + strand at 972.582 kb on - strand at 972.582 kb on - strand at 972.582 kb on - strand at 972.584 kb on + strand at 972.585 kb on - strand at 972.585 kb on - strand at 972.640 kb on - strand at 972.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 250 mM remove 969,753 - Psest_0893 0.54 -0.9 969,753 - Psest_0893 0.54 +0.7 969,796 + Psest_0893 0.58 -1.5 969,796 + Psest_0893 0.58 -0.5 969,796 + Psest_0893 0.58 -0.7 969,797 - Psest_0893 0.58 -1.8 969,797 - Psest_0893 0.58 -1.4 969,813 + Psest_0893 0.60 -1.6 969,817 + Psest_0893 0.61 -2.1 969,817 + Psest_0893 0.61 -0.4 969,817 + Psest_0893 0.61 -2.0 969,817 + Psest_0893 0.61 +1.0 969,817 + Psest_0893 0.61 -2.8 969,817 + Psest_0893 0.61 -0.5 969,817 + Psest_0893 0.61 -0.7 969,817 + Psest_0893 0.61 +0.7 969,818 - Psest_0893 0.61 -2.2 969,818 - Psest_0893 0.61 -1.1 969,873 + Psest_0893 0.67 -1.6 969,874 - Psest_0893 0.67 -3.0 969,874 - Psest_0893 0.67 -0.1 969,916 + Psest_0893 0.71 +0.7 969,916 + Psest_0893 0.71 -0.5 969,916 + Psest_0893 0.71 -1.8 970,068 + Psest_0893 0.88 -1.8 970,068 + Psest_0893 0.88 +1.5 970,068 + Psest_0893 0.88 +0.5 970,068 + Psest_0893 0.88 -1.1 970,068 + Psest_0893 0.88 -0.8 970,068 + Psest_0893 0.88 -2.2 970,069 - Psest_0893 0.88 -0.8 970,069 - Psest_0893 0.88 -0.7 970,069 - Psest_0893 0.88 -3.4 970,070 + Psest_0893 0.88 -0.3 970,070 + Psest_0893 0.88 -2.6 970,070 + Psest_0893 0.88 -1.4 970,070 + Psest_0893 0.88 -1.7 970,070 + Psest_0893 0.88 -2.2 970,070 + Psest_0893 0.88 -2.9 970,070 + Psest_0893 0.88 -1.6 970,070 + Psest_0893 0.88 -1.1 970,071 - Psest_0893 0.88 -0.5 970,071 - Psest_0893 0.88 +0.2 970,071 - Psest_0893 0.88 -0.2 970,116 - -0.3 970,116 - -1.4 970,126 + +0.3 970,127 - -0.4 970,127 - -0.1 970,127 - -1.1 970,152 + -1.5 970,152 + -1.0 970,152 + +0.6 970,153 - -2.4 970,153 - -1.8 970,175 + -0.7 970,175 + +1.2 970,175 + -2.4 970,175 + -2.3 970,175 + -0.8 970,176 - +2.2 970,176 - -1.0 970,176 - +0.9 970,176 - -0.0 970,176 - -0.6 970,176 - -0.8 970,176 - +0.1 970,176 - +0.1 970,176 - -3.1 970,176 - -0.7 970,176 - +0.1 970,176 - +1.2 970,185 - +0.6 970,222 + -1.1 970,222 + +1.0 970,222 + -2.4 970,222 + -0.9 970,223 - +0.4 970,223 - +0.3 970,243 + -1.6 970,243 + +0.1 970,243 + -0.2 970,244 - +2.1 970,244 - -0.4 970,244 - -0.0 970,244 - -0.7 970,244 - -2.0 970,244 - +0.1 970,244 - -0.9 970,244 - -0.9 970,270 + -0.5 970,324 + -1.1 970,324 + +0.5 970,325 - -0.7 970,325 - -1.1 970,325 - -1.0 970,326 + -1.0 970,327 - -1.6 970,327 - +0.3 970,327 - +1.5 970,327 - -1.3 970,339 + -1.4 970,354 + -1.7 970,355 - +0.5 970,391 - -0.5 970,391 - -1.9 970,391 - +1.2 970,391 - -0.9 970,431 + -0.9 970,432 - +0.0 970,434 - -2.0 970,499 - -2.0 970,546 + -2.4 970,546 + -2.4 970,601 + -2.2 970,676 + -0.5 970,676 + +0.8 970,676 + -2.2 970,676 + +1.5 970,676 + -1.4 970,676 + +0.9 970,677 - -2.5 970,677 - -0.9 970,677 - +1.5 970,677 - -0.2 970,695 + +0.6 970,695 + -1.5 970,696 - +1.1 970,696 - -1.2 970,854 - +0.1 970,854 - -0.9 970,878 + Psest_0895 0.12 -0.9 970,878 + Psest_0895 0.12 +0.8 970,878 + Psest_0895 0.12 +2.1 970,878 + Psest_0895 0.12 -0.3 970,878 + Psest_0895 0.12 -1.4 970,878 + Psest_0895 0.12 -1.5 970,878 + Psest_0895 0.12 -0.5 970,878 + Psest_0895 0.12 -0.5 970,878 + Psest_0895 0.12 +2.1 970,878 + Psest_0895 0.12 -0.2 970,878 + Psest_0895 0.12 -0.9 970,878 + Psest_0895 0.12 +0.2 970,878 + Psest_0895 0.12 -0.2 970,878 + Psest_0895 0.12 -1.3 970,878 + Psest_0895 0.12 +2.7 970,878 + Psest_0895 0.12 -3.2 970,878 + Psest_0895 0.12 -1.8 970,879 - Psest_0895 0.12 -1.5 970,879 - Psest_0895 0.12 -0.8 970,879 - Psest_0895 0.12 +0.4 970,879 - Psest_0895 0.12 -1.5 970,879 - Psest_0895 0.12 -0.5 970,879 - Psest_0895 0.12 -2.7 970,879 - Psest_0895 0.12 -0.9 970,879 - Psest_0895 0.12 +0.5 970,879 - Psest_0895 0.12 -1.8 970,879 - Psest_0895 0.12 -1.9 970,879 - Psest_0895 0.12 +0.5 970,948 + Psest_0895 0.18 +0.5 970,948 + Psest_0895 0.18 -0.0 970,949 - Psest_0895 0.18 -2.5 970,949 - Psest_0895 0.18 -0.5 971,112 + Psest_0895 0.32 -0.1 971,112 + Psest_0895 0.32 -0.9 971,112 + Psest_0895 0.32 -0.8 971,112 + Psest_0895 0.32 +0.2 971,112 + Psest_0895 0.32 -0.2 971,113 - Psest_0895 0.32 +0.1 971,205 + Psest_0895 0.40 +0.9 971,206 - Psest_0895 0.40 -0.0 971,206 - Psest_0895 0.40 +0.4 971,206 - Psest_0895 0.40 +2.2 971,206 - Psest_0895 0.40 -2.9 971,206 - Psest_0895 0.40 -2.4 971,289 + Psest_0895 0.48 +0.1 971,290 - Psest_0895 0.48 -0.7 971,359 + Psest_0895 0.54 -0.8 971,359 + Psest_0895 0.54 -1.5 971,360 - Psest_0895 0.54 -2.3 971,360 - Psest_0895 0.54 -0.4 971,360 - Psest_0895 0.54 -1.7 971,362 + Psest_0895 0.54 -0.8 971,362 + Psest_0895 0.54 +0.9 971,362 + Psest_0895 0.54 -0.0 971,363 - Psest_0895 0.54 -0.7 971,363 - Psest_0895 0.54 -0.9 971,363 - Psest_0895 0.54 -0.5 971,363 - Psest_0895 0.54 +1.1 971,457 + Psest_0895 0.62 -0.2 971,457 + Psest_0895 0.62 -0.7 971,458 - Psest_0895 0.62 -0.2 971,458 - Psest_0895 0.62 -0.2 971,458 - Psest_0895 0.62 +0.2 971,468 + Psest_0895 0.63 -0.4 971,468 + Psest_0895 0.63 -0.2 971,469 - Psest_0895 0.63 -0.4 971,727 + Psest_0895 0.86 +0.7 971,727 + Psest_0895 0.86 +1.1 971,727 + Psest_0895 0.86 -0.1 971,727 + Psest_0895 0.86 +0.4 971,727 + Psest_0895 0.86 -2.1 971,749 + Psest_0895 0.88 +1.0 971,749 + Psest_0895 0.88 +0.5 971,749 + Psest_0895 0.88 -1.5 971,749 + Psest_0895 0.88 -1.7 971,750 - Psest_0895 0.88 -0.9 971,750 - Psest_0895 0.88 -2.1 971,750 - Psest_0895 0.88 +0.5 971,823 + +0.1 971,823 + -0.4 971,823 + +0.9 971,823 + -0.3 971,823 + +0.2 971,823 + +0.5 971,823 + +0.8 971,823 + +1.0 971,823 + -0.7 971,823 + +0.2 971,823 + -1.2 971,824 - -1.7 971,824 - -2.1 971,824 - -0.7 971,824 - -0.7 971,824 - +1.5 971,824 - -2.9 971,824 - -1.7 971,824 - -0.7 971,824 - -0.9 971,824 - -0.2 971,825 + -0.1 971,825 + +0.1 971,825 + +0.1 971,825 + +0.8 971,825 + +0.4 971,825 + +0.7 971,825 + +1.2 971,825 + +0.7 971,825 + -1.4 971,825 + +0.1 971,825 + -0.5 971,825 + +0.8 971,825 + +0.5 971,825 + +0.5 971,826 - -1.4 971,826 - -1.5 971,826 - -2.4 971,826 - -0.7 971,826 - -1.3 971,826 - -0.9 971,826 - -0.6 971,932 + -0.2 971,932 + -1.6 972,056 - +0.8 972,056 - +0.1 972,126 + -1.6 972,126 + -0.2 972,126 + -1.3 972,126 + +1.5 972,126 + -0.1 972,126 + -1.1 972,126 + -0.5 972,126 + -0.5 972,126 + +0.1 972,126 + +0.9 972,127 - -0.1 972,127 - +1.6 972,127 - -0.3 972,127 - -0.9 972,127 - -0.7 972,127 - +0.4 972,129 + -1.0 972,137 + -0.4 972,137 + +0.9 972,138 - +0.3 972,138 - -1.7 972,149 + +0.5 972,149 + -1.6 972,150 - +0.3 972,150 - -2.0 972,156 + -0.7 972,157 - -1.6 972,157 - -1.1 972,157 - -0.6 972,157 - -0.7 972,186 - +1.1 972,202 - -0.5 972,265 - -1.1 972,265 - -1.8 972,265 - -0.9 972,275 - -0.5 972,338 + -0.5 972,338 + +0.8 972,338 + -0.3 972,339 - -1.6 972,477 - -0.9 972,538 + -1.3 972,539 - -0.6 972,539 - -1.2 972,550 + +2.4 972,581 + -0.2 972,581 + +0.5 972,581 + -0.7 972,581 + -1.7 972,582 - +1.1 972,582 - -0.0 972,582 - +0.1 972,584 + -0.9 972,585 - +1.5 972,585 - +0.8 972,640 - -0.9 972,640 - -1.6
Or see this region's nucleotide sequence