Experiment: nitrate 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0709 and Psest_0710 overlap by 4 nucleotides Psest_0710 and Psest_0711 are separated by 166 nucleotides Psest_0711 and Psest_0712 are separated by 196 nucleotides Psest_0712 and Psest_0713 are separated by 9 nucleotides Psest_0713 and Psest_0714 are separated by 5 nucleotides Psest_0714 and Psest_0715 are separated by 113 nucleotides
Psest_0709: Psest_0709 - pseudouridine synthase, RluA family, at 778,325 to 779,452
_0709
Psest_0710: Psest_0710 - uncharacterized protein, YfiH family, at 779,449 to 780,186
_0710
Psest_0711: Psest_0711 - ATP-dependent chaperone ClpB, at 780,353 to 782,917
_0711
Psest_0712: Psest_0712 - tRNA_Asn_GTT, at 783,114 to 783,189
_0712
Psest_0713: Psest_0713 - tRNA_Pro_TGG, at 783,199 to 783,275
_0713
Psest_0714: Psest_0714 - tRNA_Lys_TTT, at 783,281 to 783,356
_0714
Psest_0715: Psest_0715 - NADH dehydrogenase, FAD-containing subunit, at 783,470 to 784,765
_0715
Position (kb) 780
781
782
783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.282 kb on + strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.283 kb on - strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.302 kb on + strand at 780.303 kb on - strand at 780.334 kb on + strand at 780.665 kb on + strand, within Psest_0711 at 780.665 kb on + strand, within Psest_0711 at 780.666 kb on - strand, within Psest_0711 at 780.666 kb on - strand, within Psest_0711 at 780.666 kb on - strand, within Psest_0711 at 780.666 kb on - strand, within Psest_0711 at 780.709 kb on + strand, within Psest_0711 at 780.842 kb on + strand, within Psest_0711 at 780.842 kb on + strand, within Psest_0711 at 780.842 kb on + strand, within Psest_0711 at 780.842 kb on + strand, within Psest_0711 at 780.842 kb on + strand, within Psest_0711 at 780.842 kb on + strand, within Psest_0711 at 780.842 kb on + strand, within Psest_0711 at 780.842 kb on + strand, within Psest_0711 at 780.842 kb on + strand, within Psest_0711 at 780.842 kb on + strand, within Psest_0711 at 780.843 kb on - strand, within Psest_0711 at 780.843 kb on - strand, within Psest_0711 at 780.843 kb on - strand, within Psest_0711 at 781.195 kb on + strand, within Psest_0711 at 781.195 kb on + strand, within Psest_0711 at 781.196 kb on - strand, within Psest_0711 at 781.292 kb on - strand, within Psest_0711 at 781.316 kb on + strand, within Psest_0711 at 781.317 kb on - strand, within Psest_0711 at 781.317 kb on - strand, within Psest_0711 at 781.317 kb on - strand, within Psest_0711 at 781.317 kb on - strand, within Psest_0711 at 781.359 kb on + strand, within Psest_0711 at 781.359 kb on + strand, within Psest_0711 at 781.421 kb on + strand, within Psest_0711 at 781.428 kb on + strand, within Psest_0711 at 781.429 kb on - strand, within Psest_0711 at 781.429 kb on - strand, within Psest_0711 at 781.429 kb on - strand, within Psest_0711 at 781.429 kb on - strand, within Psest_0711 at 781.490 kb on + strand, within Psest_0711 at 781.490 kb on + strand, within Psest_0711 at 781.490 kb on + strand, within Psest_0711 at 781.490 kb on + strand, within Psest_0711 at 781.490 kb on + strand, within Psest_0711 at 781.491 kb on - strand, within Psest_0711 at 781.491 kb on - strand, within Psest_0711 at 781.491 kb on - strand, within Psest_0711 at 781.715 kb on + strand, within Psest_0711 at 781.867 kb on + strand, within Psest_0711 at 782.356 kb on + strand, within Psest_0711 at 782.924 kb on + strand at 782.924 kb on + strand at 783.013 kb on + strand at 783.014 kb on - strand at 783.030 kb on - strand at 783.357 kb on + strand at 783.357 kb on + strand at 783.357 kb on + strand at 783.535 kb on + strand at 783.550 kb on - strand at 783.550 kb on - strand at 783.550 kb on - strand at 783.550 kb on - strand at 783.550 kb on - strand at 783.550 kb on - strand at 783.583 kb on + strand at 783.583 kb on + strand at 783.584 kb on - strand at 783.585 kb on + strand at 783.585 kb on + strand at 783.585 kb on + strand at 783.585 kb on + strand at 783.585 kb on + strand at 783.585 kb on + strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.586 kb on - strand at 783.696 kb on + strand, within Psest_0715 at 783.696 kb on + strand, within Psest_0715 at 783.696 kb on + strand, within Psest_0715 at 783.696 kb on + strand, within Psest_0715 at 783.702 kb on + strand, within Psest_0715
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 250 mM remove 780,282 + -2.4 780,282 + +0.4 780,282 + -0.2 780,282 + -2.4 780,282 + -0.0 780,282 + -0.8 780,282 + -0.5 780,282 + -0.8 780,282 + +1.7 780,282 + +1.2 780,282 + -2.6 780,282 + +0.7 780,282 + -0.7 780,282 + +0.3 780,283 - -2.7 780,283 - -1.7 780,283 - -0.6 780,283 - +0.6 780,283 - -3.2 780,283 - -1.1 780,283 - -3.6 780,283 - -0.6 780,283 - -3.1 780,283 - -1.6 780,283 - -0.5 780,283 - +1.0 780,283 - -1.2 780,283 - -0.8 780,283 - +0.4 780,283 - -1.2 780,302 + -0.2 780,302 + -1.9 780,302 + +0.7 780,302 + -1.5 780,302 + +0.1 780,303 - -3.7 780,334 + +1.8 780,665 + Psest_0711 0.12 +2.0 780,665 + Psest_0711 0.12 +0.2 780,666 - Psest_0711 0.12 +0.4 780,666 - Psest_0711 0.12 -1.1 780,666 - Psest_0711 0.12 -0.2 780,666 - Psest_0711 0.12 -2.2 780,709 + Psest_0711 0.14 -3.1 780,842 + Psest_0711 0.19 +0.2 780,842 + Psest_0711 0.19 -1.4 780,842 + Psest_0711 0.19 -2.2 780,842 + Psest_0711 0.19 +0.5 780,842 + Psest_0711 0.19 +0.7 780,842 + Psest_0711 0.19 +1.2 780,842 + Psest_0711 0.19 -0.6 780,842 + Psest_0711 0.19 +0.4 780,842 + Psest_0711 0.19 +0.1 780,842 + Psest_0711 0.19 +0.1 780,843 - Psest_0711 0.19 -0.0 780,843 - Psest_0711 0.19 -1.5 780,843 - Psest_0711 0.19 -0.6 781,195 + Psest_0711 0.33 +0.9 781,195 + Psest_0711 0.33 +0.4 781,196 - Psest_0711 0.33 -0.2 781,292 - Psest_0711 0.37 -0.2 781,316 + Psest_0711 0.38 +2.2 781,317 - Psest_0711 0.38 -1.0 781,317 - Psest_0711 0.38 -0.7 781,317 - Psest_0711 0.38 -2.4 781,317 - Psest_0711 0.38 -1.4 781,359 + Psest_0711 0.39 +0.2 781,359 + Psest_0711 0.39 +0.7 781,421 + Psest_0711 0.42 -0.2 781,428 + Psest_0711 0.42 +0.8 781,429 - Psest_0711 0.42 +1.7 781,429 - Psest_0711 0.42 +0.4 781,429 - Psest_0711 0.42 +1.3 781,429 - Psest_0711 0.42 +1.2 781,490 + Psest_0711 0.44 -0.3 781,490 + Psest_0711 0.44 +1.6 781,490 + Psest_0711 0.44 +0.5 781,490 + Psest_0711 0.44 +0.5 781,490 + Psest_0711 0.44 +0.9 781,491 - Psest_0711 0.44 +2.0 781,491 - Psest_0711 0.44 +0.9 781,491 - Psest_0711 0.44 +2.0 781,715 + Psest_0711 0.53 +0.2 781,867 + Psest_0711 0.59 +0.2 782,356 + Psest_0711 0.78 +1.5 782,924 + +0.2 782,924 + -0.3 783,013 + -0.6 783,014 - -1.8 783,030 - +0.5 783,357 + +2.0 783,357 + +2.0 783,357 + +3.1 783,535 + -0.2 783,550 - -0.5 783,550 - +1.0 783,550 - +1.8 783,550 - +1.7 783,550 - +3.1 783,550 - +1.5 783,583 + +1.0 783,583 + +0.7 783,584 - -1.5 783,585 + +0.8 783,585 + +0.8 783,585 + +1.1 783,585 + -1.0 783,585 + +1.0 783,585 + +0.5 783,586 - +1.0 783,586 - +0.7 783,586 - +0.0 783,586 - +1.9 783,586 - +1.0 783,586 - +1.9 783,586 - -0.0 783,586 - +0.7 783,586 - +1.5 783,586 - -0.2 783,586 - +1.1 783,696 + Psest_0715 0.17 +1.2 783,696 + Psest_0715 0.17 +1.9 783,696 + Psest_0715 0.17 +2.1 783,696 + Psest_0715 0.17 +1.4 783,702 + Psest_0715 0.18 +1.8
Or see this region's nucleotide sequence