Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0703

Experiment: nitrate 250 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0702 and Psest_0703 are separated by 140 nucleotidesPsest_0703 and Psest_0704 are separated by 217 nucleotides Psest_0702: Psest_0702 - Methyl-accepting chemotaxis protein, at 768,870 to 770,831 _0702 Psest_0703: Psest_0703 - diguanylate cyclase (GGDEF) domain, at 770,972 to 772,567 _0703 Psest_0704: Psest_0704 - Uncharacterized protein conserved in bacteria, at 772,785 to 773,843 _0704 Position (kb) 770 771 772 773Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 770.378 kb on - strand, within Psest_0702at 770.442 kb on + strand, within Psest_0702at 770.566 kb on - strand, within Psest_0702at 770.627 kb on - strand, within Psest_0702at 770.653 kb on + strandat 770.654 kb on - strandat 770.654 kb on - strandat 770.726 kb on - strandat 771.044 kb on + strandat 771.045 kb on - strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.101 kb on + strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.102 kb on - strandat 771.197 kb on + strand, within Psest_0703at 771.429 kb on + strand, within Psest_0703at 771.429 kb on + strand, within Psest_0703at 771.457 kb on + strand, within Psest_0703at 771.457 kb on + strand, within Psest_0703at 771.603 kb on + strand, within Psest_0703at 771.603 kb on + strand, within Psest_0703at 771.603 kb on + strand, within Psest_0703at 771.604 kb on - strand, within Psest_0703at 771.604 kb on - strand, within Psest_0703at 771.604 kb on - strand, within Psest_0703at 771.604 kb on - strand, within Psest_0703at 771.624 kb on + strand, within Psest_0703at 771.625 kb on - strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.681 kb on + strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 771.682 kb on - strand, within Psest_0703at 772.035 kb on - strand, within Psest_0703at 772.035 kb on - strand, within Psest_0703at 772.166 kb on + strand, within Psest_0703at 772.205 kb on - strand, within Psest_0703at 772.205 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.207 kb on - strand, within Psest_0703at 772.209 kb on - strand, within Psest_0703at 772.209 kb on - strand, within Psest_0703at 772.284 kb on + strand, within Psest_0703at 772.284 kb on + strand, within Psest_0703at 772.456 kb on - strandat 772.706 kb on + strandat 772.706 kb on + strandat 772.707 kb on - strandat 772.707 kb on - strandat 772.708 kb on + strandat 772.708 kb on + strandat 772.708 kb on + strandat 772.708 kb on + strandat 772.708 kb on + strandat 772.709 kb on - strandat 772.902 kb on + strand, within Psest_0704at 772.902 kb on + strand, within Psest_0704at 772.902 kb on + strand, within Psest_0704at 772.952 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.370 kb on + strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704at 773.371 kb on - strand, within Psest_0704

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 250 mM
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770,378 - Psest_0702 0.77 +0.1
770,442 + Psest_0702 0.80 -2.7
770,566 - Psest_0702 0.86 -0.6
770,627 - Psest_0702 0.90 +1.4
770,653 + -0.7
770,654 - -1.8
770,654 - +0.0
770,726 - -1.2
771,044 + +1.0
771,045 - -3.3
771,101 + +0.5
771,101 + -2.1
771,101 + -1.1
771,101 + -0.6
771,101 + +0.3
771,101 + +2.2
771,101 + +0.5
771,101 + -0.2
771,101 + -0.8
771,101 + +0.8
771,101 + -2.9
771,101 + +1.7
771,102 - -1.9
771,102 - -1.9
771,102 - -0.8
771,102 - -1.7
771,102 - -2.1
771,102 - +0.6
771,102 - -0.4
771,102 - -0.4
771,197 + Psest_0703 0.14 -0.4
771,429 + Psest_0703 0.29 -2.5
771,429 + Psest_0703 0.29 -0.4
771,457 + Psest_0703 0.30 -2.1
771,457 + Psest_0703 0.30 -0.8
771,603 + Psest_0703 0.40 +0.2
771,603 + Psest_0703 0.40 -0.5
771,603 + Psest_0703 0.40 -0.8
771,604 - Psest_0703 0.40 +0.2
771,604 - Psest_0703 0.40 +0.3
771,604 - Psest_0703 0.40 -2.0
771,604 - Psest_0703 0.40 -0.7
771,624 + Psest_0703 0.41 -2.0
771,625 - Psest_0703 0.41 -2.0
771,681 + Psest_0703 0.44 -0.8
771,681 + Psest_0703 0.44 +0.0
771,681 + Psest_0703 0.44 +0.2
771,681 + Psest_0703 0.44 -0.7
771,681 + Psest_0703 0.44 +0.8
771,681 + Psest_0703 0.44 -0.7
771,681 + Psest_0703 0.44 +0.5
771,681 + Psest_0703 0.44 -0.6
771,681 + Psest_0703 0.44 -0.4
771,681 + Psest_0703 0.44 -0.2
771,681 + Psest_0703 0.44 +4.0
771,681 + Psest_0703 0.44 +0.5
771,681 + Psest_0703 0.44 -0.3
771,681 + Psest_0703 0.44 +0.2
771,681 + Psest_0703 0.44 -0.8
771,681 + Psest_0703 0.44 -1.3
771,681 + Psest_0703 0.44 -1.9
771,681 + Psest_0703 0.44 -0.6
771,681 + Psest_0703 0.44 -1.9
771,681 + Psest_0703 0.44 +0.5
771,681 + Psest_0703 0.44 -1.2
771,681 + Psest_0703 0.44 +0.2
771,681 + Psest_0703 0.44 +0.5
771,681 + Psest_0703 0.44 -0.8
771,681 + Psest_0703 0.44 +0.8
771,681 + Psest_0703 0.44 -1.0
771,681 + Psest_0703 0.44 -2.3
771,681 + Psest_0703 0.44 +1.1
771,681 + Psest_0703 0.44 +0.6
771,681 + Psest_0703 0.44 -0.7
771,681 + Psest_0703 0.44 -0.2
771,682 - Psest_0703 0.44 -3.9
771,682 - Psest_0703 0.44 -0.8
771,682 - Psest_0703 0.44 -2.0
771,682 - Psest_0703 0.44 -1.2
771,682 - Psest_0703 0.44 -3.3
771,682 - Psest_0703 0.44 -1.9
771,682 - Psest_0703 0.44 +0.5
771,682 - Psest_0703 0.44 -2.0
771,682 - Psest_0703 0.44 -2.9
771,682 - Psest_0703 0.44 -1.2
771,682 - Psest_0703 0.44 -1.2
771,682 - Psest_0703 0.44 -1.4
772,035 - Psest_0703 0.67 -2.8
772,035 - Psest_0703 0.67 -3.1
772,166 + Psest_0703 0.75 +0.4
772,205 - Psest_0703 0.77 -1.4
772,205 - Psest_0703 0.77 -1.4
772,207 - Psest_0703 0.77 -1.4
772,207 - Psest_0703 0.77 -1.4
772,207 - Psest_0703 0.77 +0.5
772,207 - Psest_0703 0.77 -0.4
772,207 - Psest_0703 0.77 -1.4
772,207 - Psest_0703 0.77 +0.8
772,207 - Psest_0703 0.77 -2.0
772,207 - Psest_0703 0.77 -0.8
772,207 - Psest_0703 0.77 -2.1
772,207 - Psest_0703 0.77 -2.2
772,207 - Psest_0703 0.77 +1.0
772,207 - Psest_0703 0.77 -1.5
772,207 - Psest_0703 0.77 -2.9
772,207 - Psest_0703 0.77 -1.5
772,207 - Psest_0703 0.77 -0.5
772,209 - Psest_0703 0.78 -0.8
772,209 - Psest_0703 0.78 -1.5
772,284 + Psest_0703 0.82 +0.3
772,284 + Psest_0703 0.82 -0.8
772,456 - -0.1
772,706 + +0.1
772,706 + +0.9
772,707 - -4.4
772,707 - -0.3
772,708 + -0.4
772,708 + +0.6
772,708 + -0.4
772,708 + -0.6
772,708 + +0.2
772,709 - -2.6
772,902 + Psest_0704 0.11 +1.0
772,902 + Psest_0704 0.11 +0.2
772,902 + Psest_0704 0.11 -0.4
772,952 + Psest_0704 0.16 +0.6
773,370 + Psest_0704 0.55 -0.3
773,370 + Psest_0704 0.55 +0.0
773,370 + Psest_0704 0.55 +0.3
773,370 + Psest_0704 0.55 -1.0
773,370 + Psest_0704 0.55 -1.4
773,370 + Psest_0704 0.55 -0.8
773,370 + Psest_0704 0.55 -0.1
773,370 + Psest_0704 0.55 +0.0
773,370 + Psest_0704 0.55 -1.2
773,370 + Psest_0704 0.55 +1.2
773,371 - Psest_0704 0.55 +0.1
773,371 - Psest_0704 0.55 -1.0
773,371 - Psest_0704 0.55 +0.0
773,371 - Psest_0704 0.55 -1.2

Or see this region's nucleotide sequence